BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR49
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
crm-miR-244-3p MIMAT0011584 Caenorhabditis remanei miR-244-3p 14 20
efu-miR-106 MIMAT0035164 Eptesicus fuscus miR-106 12 80
efu-miR-9186l MIMAT0034904 Eptesicus fuscus miR-9186l 12 80
ppc-miR-8219-5p MIMAT0032870 Pristionchus pacificus miR-8219-5p 12 80
gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p 12 80
mja-miR-6491 MIMAT0025299 Marsupenaeus japonicus miR-6491 12 80
hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p 12 80
tca-miR-3848-5p MIMAT0018744 Tribolium castaneum miR-3848-5p 12 80
hsa-miR-4321 MIMAT0016874 Homo sapiens miR-4321 12 80
cbr-miR-2225-5p MIMAT0011497 Caenorhabditis briggsae miR-2225-5p 12 80
oan-miR-1385 MIMAT0007151 Ornithorhynchus anatinus miR-1385 12 80
hcmv-miR-US25-2-5p MIMAT0001582 Human cytomegalovirus miR-US25-2-5p 12 80
>crm-miR-244-3p MIMAT0011584 Caenorhabditis remanei miR-244-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcggta 7
|||||||
Sbjct: 7 agcggta 1
>efu-miR-106 MIMAT0035164 Eptesicus fuscus miR-106
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcggta 7
||||||
Sbjct: 6 gcggta 1
>efu-miR-9186l MIMAT0034904 Eptesicus fuscus miR-9186l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcggta 7
||||||
Sbjct: 3 gcggta 8
>ppc-miR-8219-5p MIMAT0032870 Pristionchus pacificus miR-8219-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcggt 6
||||||
Sbjct: 6 agcggt 1
>gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcggta 7
||||||
Sbjct: 6 gcggta 1
>mja-miR-6491 MIMAT0025299 Marsupenaeus japonicus miR-6491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcggta 7
||||||
Sbjct: 1 gcggta 6
>hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcggt 6
||||||
Sbjct: 1 agcggt 6
>tca-miR-3848-5p MIMAT0018744 Tribolium castaneum miR-3848-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcggt 6
||||||
Sbjct: 3 agcggt 8
>hsa-miR-4321 MIMAT0016874 Homo sapiens miR-4321
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcggt 6
||||||
Sbjct: 3 agcggt 8
>cbr-miR-2225-5p MIMAT0011497 Caenorhabditis briggsae
miR-2225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcggt 6
||||||
Sbjct: 6 agcggt 1
>oan-miR-1385 MIMAT0007151 Ornithorhynchus anatinus miR-1385
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcggta 7
||||||
Sbjct: 6 gcggta 1
>hcmv-miR-US25-2-5p MIMAT0001582 Human cytomegalovirus
miR-US25-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcggt 6
||||||
Sbjct: 1 agcggt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 24
Number of extensions: 23
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)