BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wssv-miR49
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

crm-miR-244-3p MIMAT0011584 Caenorhabditis remanei miR-244-3p          14      20
efu-miR-106 MIMAT0035164 Eptesicus fuscus miR-106                      12      80
efu-miR-9186l MIMAT0034904 Eptesicus fuscus miR-9186l                  12      80
ppc-miR-8219-5p MIMAT0032870 Pristionchus pacificus miR-8219-5p        12      80
gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p                 12      80
mja-miR-6491 MIMAT0025299 Marsupenaeus japonicus miR-6491              12      80
hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p                  12      80
tca-miR-3848-5p MIMAT0018744 Tribolium castaneum miR-3848-5p           12      80
hsa-miR-4321 MIMAT0016874 Homo sapiens miR-4321                        12      80
cbr-miR-2225-5p MIMAT0011497 Caenorhabditis briggsae miR-2225-5p       12      80
oan-miR-1385 MIMAT0007151 Ornithorhynchus anatinus miR-1385            12      80
hcmv-miR-US25-2-5p MIMAT0001582 Human cytomegalovirus miR-US25-2-5p    12      80
>crm-miR-244-3p MIMAT0011584 Caenorhabditis remanei miR-244-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agcggta 7
         |||||||
Sbjct: 7 agcggta 1
>efu-miR-106 MIMAT0035164 Eptesicus fuscus miR-106
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcggta 7
         ||||||
Sbjct: 6 gcggta 1
>efu-miR-9186l MIMAT0034904 Eptesicus fuscus miR-9186l
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gcggta 7
         ||||||
Sbjct: 3 gcggta 8
>ppc-miR-8219-5p MIMAT0032870 Pristionchus pacificus miR-8219-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agcggt 6
         ||||||
Sbjct: 6 agcggt 1
>gga-miR-7477-3p MIMAT0029109 Gallus gallus miR-7477-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcggta 7
         ||||||
Sbjct: 6 gcggta 1
>mja-miR-6491 MIMAT0025299 Marsupenaeus japonicus miR-6491
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gcggta 7
         ||||||
Sbjct: 1 gcggta 6
>hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agcggt 6
         ||||||
Sbjct: 1 agcggt 6
>tca-miR-3848-5p MIMAT0018744 Tribolium castaneum miR-3848-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agcggt 6
         ||||||
Sbjct: 3 agcggt 8
>hsa-miR-4321 MIMAT0016874 Homo sapiens miR-4321
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agcggt 6
         ||||||
Sbjct: 3 agcggt 8
>cbr-miR-2225-5p MIMAT0011497 Caenorhabditis briggsae
         miR-2225-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agcggt 6
         ||||||
Sbjct: 6 agcggt 1
>oan-miR-1385 MIMAT0007151 Ornithorhynchus anatinus miR-1385
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcggta 7
         ||||||
Sbjct: 6 gcggta 1
>hcmv-miR-US25-2-5p MIMAT0001582 Human cytomegalovirus
         miR-US25-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agcggt 6
         ||||||
Sbjct: 1 agcggt 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 24
Number of extensions: 23
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)