BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h9-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdm-miR1511 MIMAT0026188 Malus domestica miR1511 14 20
hvt-miR-H12-3p MIMAT0012864 Herpesvirus of miR-H12-3p 14 20
hvt-miR-H9-3p MIMAT0012722 Herpesvirus of miR-H9-3p 14 20
ssa-miR-725-5p MIMAT0032673 Salmo salar miR-725-5p 12 80
ssa-miR-155-3p MIMAT0032393 Salmo salar miR-155-3p 12 80
ppe-miR7125-5p MIMAT0031536 Prunus persica miR7125-5p 12 80
ptc-miR7827 MIMAT0030403 Populus trichocarpa miR7827 12 80
mdo-miR-7292-3p MIMAT0028569 Monodelphis domestica miR-7292-3p 12 80
mdo-miR-7273-5p MIMAT0028520 Monodelphis domestica miR-7273-5p 12 80
sbi-miR6222-3p MIMAT0026411 Sorghum bicolor miR6222-3p 12 80
mmu-miR-7072-3p MIMAT0028051 Mus musculus miR-7072-3p 12 80
hsa-miR-6069 MIMAT0023694 Homo sapiens miR-6069 12 80
cin-miR-5597-3p MIMAT0022318 Ciona intestinalis miR-5597-3p 12 80
bdi-miR5163a-5p MIMAT0027076 Brachypodium distachyon miR5163a-5p 12 80
hsa-miR-4661-5p MIMAT0019729 Homo sapiens miR-4661-5p 12 80
tca-miR-3828-3p MIMAT0018687 Tribolium castaneum miR-3828-3p 12 80
bmo-miR-3395 MIMAT0015599 Bombyx mori miR-3395 12 80
dsi-miR-970-5p MIMAT0012487 Drosophila simulans miR-970-5p 12 80
dps-miR-970-5p MIMAT0012221 Drosophila pseudoobscura miR-970-5p 12 80
crm-miR-60-5p MIMAT0011561 Caenorhabditis remanei miR-60-5p 12 80
ppt-miR2081 MIMAT0010020 Physcomitrella patens miR2081 12 80
gga-miR-1552-3p MIMAT0007408 Gallus gallus miR-1552-3p 12 80
smo-miR1110 MIMAT0005267 Selaginella moellendorffii miR1110 12 80
dme-miR-970-5p MIMAT0020867 Drosophila melanogaster miR-970-5p 12 80
ppt-miR898a-3p MIMAT0004383 Physcomitrella patens miR898a-3p 12 80
>mdm-miR1511 MIMAT0026188 Malus domestica miR1511
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agctagg 7
|||||||
Sbjct: 8 agctagg 2
>hvt-miR-H12-3p MIMAT0012864 Herpesvirus of miR-H12-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctagg 7
|||||||
Sbjct: 2 agctagg 8
>hvt-miR-H9-3p MIMAT0012722 Herpesvirus of miR-H9-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctagg 7
|||||||
Sbjct: 2 agctagg 8
>ssa-miR-725-5p MIMAT0032673 Salmo salar miR-725-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 1 agctag 6
>ssa-miR-155-3p MIMAT0032393 Salmo salar miR-155-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctagg 7
||||||
Sbjct: 8 gctagg 3
>ppe-miR7125-5p MIMAT0031536 Prunus persica miR7125-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctagg 7
||||||
Sbjct: 1 gctagg 6
>ptc-miR7827 MIMAT0030403 Populus trichocarpa miR7827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctagg 7
||||||
Sbjct: 1 gctagg 6
>mdo-miR-7292-3p MIMAT0028569 Monodelphis domestica miR-7292-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctagg 7
||||||
Sbjct: 3 gctagg 8
>mdo-miR-7273-5p MIMAT0028520 Monodelphis domestica miR-7273-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 3 agctag 8
>sbi-miR6222-3p MIMAT0026411 Sorghum bicolor miR6222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agctag 6
||||||
Sbjct: 6 agctag 1
>mmu-miR-7072-3p MIMAT0028051 Mus musculus miR-7072-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agctag 6
||||||
Sbjct: 6 agctag 1
>hsa-miR-6069 MIMAT0023694 Homo sapiens miR-6069
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctagg 7
||||||
Sbjct: 3 gctagg 8
>cin-miR-5597-3p MIMAT0022318 Ciona intestinalis miR-5597-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agctag 6
||||||
Sbjct: 8 agctag 3
>bdi-miR5163a-5p MIMAT0027076 Brachypodium distachyon
miR5163a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctagg 7
||||||
Sbjct: 6 gctagg 1
>hsa-miR-4661-5p MIMAT0019729 Homo sapiens miR-4661-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agctag 6
||||||
Sbjct: 8 agctag 3
>tca-miR-3828-3p MIMAT0018687 Tribolium castaneum miR-3828-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 3 agctag 8
>bmo-miR-3395 MIMAT0015599 Bombyx mori miR-3395
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 1 agctag 6
>dsi-miR-970-5p MIMAT0012487 Drosophila simulans miR-970-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 1 agctag 6
>dps-miR-970-5p MIMAT0012221 Drosophila pseudoobscura miR-970-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 1 agctag 6
>crm-miR-60-5p MIMAT0011561 Caenorhabditis remanei miR-60-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 1 agctag 6
>ppt-miR2081 MIMAT0010020 Physcomitrella patens miR2081
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 1 agctag 6
>gga-miR-1552-3p MIMAT0007408 Gallus gallus miR-1552-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agctag 6
||||||
Sbjct: 6 agctag 1
>smo-miR1110 MIMAT0005267 Selaginella moellendorffii miR1110
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctagg 7
||||||
Sbjct: 1 gctagg 6
>dme-miR-970-5p MIMAT0020867 Drosophila melanogaster miR-970-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agctag 6
||||||
Sbjct: 1 agctag 6
>ppt-miR898a-3p MIMAT0004383 Physcomitrella patens miR898a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctagg 7
||||||
Sbjct: 1 gctagg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 35
Number of extensions: 32
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
