BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-11-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-8488 MIMAT0033695 Plutella xylostella miR-8488 16 6.9
mghv-miR-M1-11-5p MIMAT0018168 Mouse gammaherpesvirus miR-M1-11-5p 16 6.9
efu-miR-9198c MIMAT0034781 Eptesicus fuscus miR-9198c 14 27
str-miR-8379a-5p MIMAT0033412 Strongyloides ratti miR-8379a-5p 14 27
ppc-miR-8226-3p MIMAT0032897 Pristionchus pacificus miR-8226-3p 14 27
mmu-miR-7243-5p MIMAT0029910 Mus musculus miR-7243-5p 14 27
mmu-miR-7649-5p MIMAT0029800 Mus musculus miR-7649-5p 14 27
hsa-miR-6876-3p MIMAT0027653 Homo sapiens miR-6876-3p 14 27
cin-miR-4127-5p MIMAT0016721 Ciona intestinalis miR-4127-5p 14 27
ppy-miR-626 MIMAT0016066 Pongo pygmaeus miR-626 14 27
hsa-miR-2277-3p MIMAT0011777 Homo sapiens miR-2277-3p 14 27
ptr-miR-626 MIMAT0008285 Pan troglodytes miR-626 14 27
mml-miR-626 MIMAT0006472 Macaca mulatta miR-626 14 27
ppt-miR533b-5p MIMAT0003914 Physcomitrella patens miR533b-5p 14 27
hcmv-miR-US4-3p MIMAT0026628 Human cytomegalovirus miR-US4-3p 14 27
hsa-miR-626 MIMAT0003295 Homo sapiens miR-626 14 27
>pxy-miR-8488 MIMAT0033695 Plutella xylostella miR-8488
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agctgtca 8
||||||||
Sbjct: 1 agctgtca 8
>mghv-miR-M1-11-5p MIMAT0018168 Mouse gammaherpesvirus
miR-M1-11-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agctgtca 8
||||||||
Sbjct: 1 agctgtca 8
>efu-miR-9198c MIMAT0034781 Eptesicus fuscus miR-9198c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctgtca 8
|||||||
Sbjct: 2 gctgtca 8
>str-miR-8379a-5p MIMAT0033412 Strongyloides ratti miR-8379a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctgtc 7
|||||||
Sbjct: 1 agctgtc 7
>ppc-miR-8226-3p MIMAT0032897 Pristionchus pacificus miR-8226-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gctgtca 8
|||||||
Sbjct: 8 gctgtca 2
>mmu-miR-7243-5p MIMAT0029910 Mus musculus miR-7243-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctgtca 8
|||||||
Sbjct: 2 gctgtca 8
>mmu-miR-7649-5p MIMAT0029800 Mus musculus miR-7649-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gctgtca 8
|||||||
Sbjct: 7 gctgtca 1
>hsa-miR-6876-3p MIMAT0027653 Homo sapiens miR-6876-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctgtc 7
|||||||
Sbjct: 1 agctgtc 7
>cin-miR-4127-5p MIMAT0016721 Ciona intestinalis miR-4127-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agctgtc 7
|||||||
Sbjct: 7 agctgtc 1
>ppy-miR-626 MIMAT0016066 Pongo pygmaeus miR-626
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctgtc 7
|||||||
Sbjct: 1 agctgtc 7
>hsa-miR-2277-3p MIMAT0011777 Homo sapiens miR-2277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gctgtca 8
|||||||
Sbjct: 7 gctgtca 1
>ptr-miR-626 MIMAT0008285 Pan troglodytes miR-626
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctgtc 7
|||||||
Sbjct: 1 agctgtc 7
>mml-miR-626 MIMAT0006472 Macaca mulatta miR-626
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctgtc 7
|||||||
Sbjct: 1 agctgtc 7
>ppt-miR533b-5p MIMAT0003914 Physcomitrella patens miR533b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctgtc 7
|||||||
Sbjct: 2 agctgtc 8
>hcmv-miR-US4-3p MIMAT0026628 Human cytomegalovirus miR-US4-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gctgtca 8
|||||||
Sbjct: 7 gctgtca 1
>hsa-miR-626 MIMAT0003295 Homo sapiens miR-626
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agctgtc 7
|||||||
Sbjct: 1 agctgtc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 470
Number of extensions: 452
Number of successful extensions: 394
Number of sequences better than 100.0: 16
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
