BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-28-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-9771k MIMAT0036578 Tupaia chinensis miR-9771k 14 20
cfa-miR-8836 MIMAT0034329 Canis familiaris miR-8836 14 20
ppe-miR8125 MIMAT0031533 Prunus persica miR8125 14 20
ppe-miR482f MIMAT0031512 Prunus persica miR482f 14 20
gga-miR-7481-5p MIMAT0029116 Gallus gallus miR-7481-5p 14 20
mdm-miR482c MIMAT0026023 Malus domestica miR482c 14 20
mdm-miR482b MIMAT0026022 Malus domestica miR482b 14 20
pde-miR482a MIMAT0025333 Pinus densata miR482a 14 20
mmu-miR-6384 MIMAT0025130 Mus musculus miR-6384 14 20
osa-miR6253 MIMAT0024876 Oryza sativa miR6253 14 20
sly-miR482e-3p MIMAT0032124 Solanum lycopersicum miR482e-3p 14 20
pma-miR-26a-2-3p MIMAT0019410 Petromyzon marinus miR-26a-2-3p 14 20
pab-miR482c MIMAT0018158 Picea abies miR482c 14 20
hsa-miR-3124-3p MIMAT0019200 Homo sapiens miR-3124-3p 14 20
ghr-miR482a MIMAT0014339 Gossypium hirsutum miR482a 14 20
rlcv-miR-rL1-28-3p MIMAT0016952 Rhesus lymphocryptovirus miR-rL1... 14 20
mmu-miR-1958 MIMAT0009431 Mus musculus miR-1958 14 20
vvi-miR482 MIMAT0006576 Vitis vinifera miR482 14 20
dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p 12 80
sly-miR482d-3p MIMAT0035460 Solanum lycopersicum miR482d-3p 12 80
gra-miR482d MIMAT0034224 Gossypium raimondii miR482d 12 80
gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d 12 80
str-miR-8365-3p MIMAT0033303 Strongyloides ratti miR-8365-3p 12 80
ppc-miR-8256-3p MIMAT0032981 Pristionchus pacificus miR-8256-3p 12 80
stu-miR319-5p MIMAT0031219 Solanum tuberosum miR319-5p 12 80
stu-miR8039 MIMAT0030951 Solanum tuberosum miR8039 12 80
prd-miR-7902-3p MIMAT0030615 Panagrellus redivivus miR-7902-3p 12 80
bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p 12 80
mmu-miR-7678-3p MIMAT0029871 Mus musculus miR-7678-3p 12 80
mdo-miR-1545c-3p MIMAT0028753 Monodelphis domestica miR-1545c-3p 12 80
mdo-miR-1545b-3-3p MIMAT0031024 Monodelphis domestica miR-1545b-... 12 80
mdo-miR-1545b-3p MIMAT0028751 Monodelphis domestica miR-1545b-3p 12 80
mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p 12 80
mdo-miR-7256-5p MIMAT0028478 Monodelphis domestica miR-7256-5p 12 80
mmu-miR-7211-5p MIMAT0028390 Mus musculus miR-7211-5p 12 80
mml-miR-3059-5p MIMAT0028246 Macaca mulatta miR-3059-5p 12 80
hsa-miR-7152-5p MIMAT0028214 Homo sapiens miR-7152-5p 12 80
bma-miR-5879b MIMAT0026379 Brugia malayi miR-5879b 12 80
hsa-miR-6739-5p MIMAT0027379 Homo sapiens miR-6739-5p 12 80
hsa-miR-6733-5p MIMAT0027367 Homo sapiens miR-6733-5p 12 80
gga-miR-6633-5p MIMAT0025729 Gallus gallus miR-6633-5p 12 80
gga-miR-6561-5p MIMAT0025629 Gallus gallus miR-6561-5p 12 80
ptc-miR482c-3p MIMAT0025278 Populus trichocarpa miR482c-3p 12 80
mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344 12 80
hvu-miR6190 MIMAT0024815 Hordeum vulgare miR6190 12 80
pgi-miR2118 MIMAT0027240 Panax ginseng miR2118 12 80
stu-miR482c MIMAT0023596 Solanum tuberosum miR482c 12 80
mmu-miR-5616-5p MIMAT0022359 Mus musculus miR-5616-5p 12 80
aca-miR-202-5p MIMAT0021848 Anolis carolinensis miR-202-5p 12 80
mtr-miR5289b MIMAT0021351 Medicago truncatula miR5289b 12 80
mtr-miR5289a MIMAT0021350 Medicago truncatula miR5289a 12 80
hsa-miR-5093 MIMAT0021085 Homo sapiens miR-5093 12 80
hsa-miR-3978 MIMAT0019363 Homo sapiens miR-3978 12 80
ame-miR-965-5p MIMAT0018557 Apis mellifera miR-965-5p 12 80
hsa-miR-3685 MIMAT0018113 Homo sapiens miR-3685 12 80
hsa-miR-4261 MIMAT0016890 Homo sapiens miR-4261 12 80
cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p 12 80
aly-miR3448-5p MIMAT0017731 Arabidopsis lyrata miR3448-5p 12 80
aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p 12 80
bmo-miR-3220 MIMAT0015400 Bombyx mori miR-3220 12 80
hsa-miR-3153 MIMAT0015026 Homo sapiens miR-3153 12 80
tgu-miR-2975 MIMAT0014485 Taeniopygia guttata miR-2975 12 80
gra-miR482 MIMAT0014329 Gossypium raimondii miR482 12 80
mml-miR-670-3p MIMAT0026954 Macaca mulatta miR-670-3p 12 80
hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p 12 80
cte-miR-2715 MIMAT0013584 Capitella teleta miR-2715 12 80
dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p 12 80
osa-miR2055 MIMAT0009980 Oryza sativa miR2055 12 80
mmu-miR-1953 MIMAT0009424 Mus musculus miR-1953 12 80
dvi-miR-316-3p MIMAT0032071 Drosophila virilis miR-316-3p 12 80
osa-miR1859 MIMAT0007792 Oryza sativa miR1859 12 80
cfa-miR-1841 MIMAT0006686 Canis familiaris miR-1841 12 80
mml-miR-516a-3p MIMAT0006374 Macaca mulatta miR-516a-3p 12 80
gga-miR-1687-5p MIMAT0007576 Gallus gallus miR-1687-5p 12 80
gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612 12 80
gga-miR-1571 MIMAT0007431 Gallus gallus miR-1571 12 80
ptc-miR1448 MIMAT0006010 Populus trichocarpa miR1448 12 80
oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus miR-1422m-3p 12 80
oan-miR-1374 MIMAT0007055 Ornithorhynchus anatinus miR-1374 12 80
ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p 12 80
ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p 12 80
xtr-miR-202-5p MIMAT0003620 Xenopus tropicalis miR-202-5p 12 80
ppt-miR1219d MIMAT0003911 Physcomitrella patens miR1219d 12 80
mmu-miR-3059-5p MIMAT0014811 Mus musculus miR-3059-5p 12 80
mmu-miR-670-3p MIMAT0017242 Mus musculus miR-670-3p 12 80
hsa-miR-670-3p MIMAT0026640 Homo sapiens miR-670-3p 12 80
gga-miR-202-5p MIMAT0003354 Gallus gallus miR-202-5p 12 80
hsa-miR-651-3p MIMAT0026624 Homo sapiens miR-651-3p 12 80
rno-miR-185-3p MIMAT0017142 Rattus norvegicus miR-185-3p 12 80
dme-miR-316-3p MIMAT0020842 Drosophila melanogaster miR-316-3p 12 80
>tch-miR-9771k MIMAT0036578 Tupaia chinensis miR-9771k
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaaag 7
|||||||
Sbjct: 1 aggaaag 7
>cfa-miR-8836 MIMAT0034329 Canis familiaris miR-8836
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaaag 7
|||||||
Sbjct: 1 aggaaag 7
>ppe-miR8125 MIMAT0031533 Prunus persica miR8125
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaaag 7
|||||||
Sbjct: 2 aggaaag 8
>ppe-miR482f MIMAT0031512 Prunus persica miR482f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>gga-miR-7481-5p MIMAT0029116 Gallus gallus miR-7481-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 7 aggaaag 1
>mdm-miR482c MIMAT0026023 Malus domestica miR482c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>mdm-miR482b MIMAT0026022 Malus domestica miR482b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>pde-miR482a MIMAT0025333 Pinus densata miR482a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>mmu-miR-6384 MIMAT0025130 Mus musculus miR-6384
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>osa-miR6253 MIMAT0024876 Oryza sativa miR6253
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaaag 7
|||||||
Sbjct: 2 aggaaag 8
>sly-miR482e-3p MIMAT0032124 Solanum lycopersicum miR482e-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>pma-miR-26a-2-3p MIMAT0019410 Petromyzon marinus miR-26a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>pab-miR482c MIMAT0018158 Picea abies miR482c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>hsa-miR-3124-3p MIMAT0019200 Homo sapiens miR-3124-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>ghr-miR482a MIMAT0014339 Gossypium hirsutum miR482a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>rlcv-miR-rL1-28-3p MIMAT0016952 Rhesus lymphocryptovirus
miR-rL1-28-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaaag 7
|||||||
Sbjct: 2 aggaaag 8
>mmu-miR-1958 MIMAT0009431 Mus musculus miR-1958
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaaag 7
|||||||
Sbjct: 2 aggaaag 8
>vvi-miR482 MIMAT0006576 Vitis vinifera miR482
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaaag 7
|||||||
Sbjct: 8 aggaaag 2
>dvi-miR-994-5p MIMAT0035606 Drosophila virilis miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>sly-miR482d-3p MIMAT0035460 Solanum lycopersicum miR482d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>gra-miR482d MIMAT0034224 Gossypium raimondii miR482d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>gra-miR7504d MIMAT0034066 Gossypium raimondii miR7504d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 1 aggaaa 6
>str-miR-8365-3p MIMAT0033303 Strongyloides ratti miR-8365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>ppc-miR-8256-3p MIMAT0032981 Pristionchus pacificus miR-8256-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 8 ggaaag 3
>stu-miR319-5p MIMAT0031219 Solanum tuberosum miR319-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 1 aggaaa 6
>stu-miR8039 MIMAT0030951 Solanum tuberosum miR8039
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>prd-miR-7902-3p MIMAT0030615 Panagrellus redivivus miR-7902-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>bdi-miR7773-3p MIMAT0030297 Brachypodium distachyon miR7773-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>mmu-miR-7678-3p MIMAT0029871 Mus musculus miR-7678-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>mdo-miR-1545c-3p MIMAT0028753 Monodelphis domestica
miR-1545c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 8 ggaaag 3
>mdo-miR-1545b-3-3p MIMAT0031024 Monodelphis domestica
miR-1545b-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 8 ggaaag 3
>mdo-miR-1545b-3p MIMAT0028751 Monodelphis domestica
miR-1545b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 8 ggaaag 3
>mdo-miR-7352-3p MIMAT0028717 Monodelphis domestica miR-7352-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>mdo-miR-7256-5p MIMAT0028478 Monodelphis domestica miR-7256-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>mmu-miR-7211-5p MIMAT0028390 Mus musculus miR-7211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 7 ggaaag 2
>mml-miR-3059-5p MIMAT0028246 Macaca mulatta miR-3059-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>hsa-miR-7152-5p MIMAT0028214 Homo sapiens miR-7152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>bma-miR-5879b MIMAT0026379 Brugia malayi miR-5879b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>hsa-miR-6739-5p MIMAT0027379 Homo sapiens miR-6739-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaag 7
||||||
Sbjct: 3 ggaaag 8
>hsa-miR-6733-5p MIMAT0027367 Homo sapiens miR-6733-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaag 7
||||||
Sbjct: 3 ggaaag 8
>gga-miR-6633-5p MIMAT0025729 Gallus gallus miR-6633-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>gga-miR-6561-5p MIMAT0025629 Gallus gallus miR-6561-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 7 ggaaag 2
>ptc-miR482c-3p MIMAT0025278 Populus trichocarpa miR482c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 7 ggaaag 2
>mmu-miR-6344 MIMAT0025087 Mus musculus miR-6344
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>hvu-miR6190 MIMAT0024815 Hordeum vulgare miR6190
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>pgi-miR2118 MIMAT0027240 Panax ginseng miR2118
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>stu-miR482c MIMAT0023596 Solanum tuberosum miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>mmu-miR-5616-5p MIMAT0022359 Mus musculus miR-5616-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>aca-miR-202-5p MIMAT0021848 Anolis carolinensis miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>mtr-miR5289b MIMAT0021351 Medicago truncatula miR5289b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>mtr-miR5289a MIMAT0021350 Medicago truncatula miR5289a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>hsa-miR-5093 MIMAT0021085 Homo sapiens miR-5093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 1 aggaaa 6
>hsa-miR-3978 MIMAT0019363 Homo sapiens miR-3978
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaag 7
||||||
Sbjct: 3 ggaaag 8
>ame-miR-965-5p MIMAT0018557 Apis mellifera miR-965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaag 7
||||||
Sbjct: 3 ggaaag 8
>hsa-miR-3685 MIMAT0018113 Homo sapiens miR-3685
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>hsa-miR-4261 MIMAT0016890 Homo sapiens miR-4261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 1 aggaaa 6
>cin-miR-4006g-3p MIMAT0016485 Ciona intestinalis miR-4006g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>aly-miR3448-5p MIMAT0017731 Arabidopsis lyrata miR3448-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>aly-miR472-3p MIMAT0017590 Arabidopsis lyrata miR472-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>bmo-miR-3220 MIMAT0015400 Bombyx mori miR-3220
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 8 ggaaag 3
>hsa-miR-3153 MIMAT0015026 Homo sapiens miR-3153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaag 7
||||||
Sbjct: 3 ggaaag 8
>tgu-miR-2975 MIMAT0014485 Taeniopygia guttata miR-2975
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>gra-miR482 MIMAT0014329 Gossypium raimondii miR482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 7 ggaaag 2
>mml-miR-670-3p MIMAT0026954 Macaca mulatta miR-670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>hvt-miR-H7-5p MIMAT0012718 Herpesvirus of miR-H7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>cte-miR-2715 MIMAT0013584 Capitella teleta miR-2715
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>dps-miR-994-5p MIMAT0012239 Drosophila pseudoobscura miR-994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>osa-miR2055 MIMAT0009980 Oryza sativa miR2055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>mmu-miR-1953 MIMAT0009424 Mus musculus miR-1953
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggaaag 7
||||||
Sbjct: 3 ggaaag 8
>dvi-miR-316-3p MIMAT0032071 Drosophila virilis miR-316-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>osa-miR1859 MIMAT0007792 Oryza sativa miR1859
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>cfa-miR-1841 MIMAT0006686 Canis familiaris miR-1841
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>mml-miR-516a-3p MIMAT0006374 Macaca mulatta miR-516a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>gga-miR-1687-5p MIMAT0007576 Gallus gallus miR-1687-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>gga-miR-1612 MIMAT0007478 Gallus gallus miR-1612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>gga-miR-1571 MIMAT0007431 Gallus gallus miR-1571
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>ptc-miR1448 MIMAT0006010 Populus trichocarpa miR1448
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggaaag 7
||||||
Sbjct: 6 ggaaag 1
>oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus
miR-1422m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 1 aggaaa 6
>oan-miR-1374 MIMAT0007055 Ornithorhynchus anatinus miR-1374
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>ath-miR865-3p MIMAT0004314 Arabidopsis thaliana miR865-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>ath-miR472-3p MIMAT0003931 Arabidopsis thaliana miR472-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 8 aggaaa 3
>xtr-miR-202-5p MIMAT0003620 Xenopus tropicalis miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>ppt-miR1219d MIMAT0003911 Physcomitrella patens miR1219d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>mmu-miR-3059-5p MIMAT0014811 Mus musculus miR-3059-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>mmu-miR-670-3p MIMAT0017242 Mus musculus miR-670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>hsa-miR-670-3p MIMAT0026640 Homo sapiens miR-670-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>gga-miR-202-5p MIMAT0003354 Gallus gallus miR-202-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>hsa-miR-651-3p MIMAT0026624 Homo sapiens miR-651-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
>rno-miR-185-3p MIMAT0017142 Rattus norvegicus miR-185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggaaa 6
||||||
Sbjct: 6 aggaaa 1
>dme-miR-316-3p MIMAT0020842 Drosophila melanogaster miR-316-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggaaa 6
||||||
Sbjct: 3 aggaaa 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 131
Number of extensions: 113
Number of successful extensions: 90
Number of sequences better than 100.0: 90
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 90
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)