BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b5-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
blv-miR-B5-5p MIMAT0025865 Bovine leukemia miR-B5-5p 16 6.9
hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p 16 6.9
tgu-miR-2961 MIMAT0014461 Taeniopygia guttata miR-2961 16 6.9
ssc-miR-9813-5p MIMAT0037031 Sus scrofa miR-9813-5p 14 27
efu-miR-9328 MIMAT0035069 Eptesicus fuscus miR-9328 14 27
sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p 14 27
prd-miR-235-5p MIMAT0030602 Panagrellus redivivus miR-235-5p 14 27
mmu-miR-7685-5p MIMAT0029896 Mus musculus miR-7685-5p 14 27
lja-miR7530 MIMAT0029353 Lotus japonicus miR7530 14 27
mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p 14 27
mdo-miR-7276-5p MIMAT0028526 Monodelphis domestica miR-7276-5p 14 27
mmu-miR-7054-5p MIMAT0028012 Mus musculus miR-7054-5p 14 27
mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p 14 27
hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p 14 27
mml-miR-4650 MIMAT0024344 Macaca mulatta miR-4650 14 27
oar-miR-1197-5p MIMAT0019257 Ovis aries miR-1197-5p 14 27
hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476 14 27
tca-miR-3877-5p MIMAT0018846 Tribolium castaneum miR-3877-5p 14 27
>blv-miR-B5-5p MIMAT0025865 Bovine leukemia miR-B5-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggaaggt 8
||||||||
Sbjct: 1 aggaaggt 8
>hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aggaaggt 8
||||||||
Sbjct: 8 aggaaggt 1
>tgu-miR-2961 MIMAT0014461 Taeniopygia guttata miR-2961
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggaaggt 8
||||||||
Sbjct: 1 aggaaggt 8
>ssc-miR-9813-5p MIMAT0037031 Sus scrofa miR-9813-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggaaggt 8
|||||||
Sbjct: 2 ggaaggt 8
>efu-miR-9328 MIMAT0035069 Eptesicus fuscus miR-9328
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaagg 7
|||||||
Sbjct: 8 aggaagg 2
>sma-miR-8465-3p MIMAT0033650 Schistosoma mansoni miR-8465-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggaaggt 8
|||||||
Sbjct: 1 ggaaggt 7
>prd-miR-235-5p MIMAT0030602 Panagrellus redivivus miR-235-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaagg 7
|||||||
Sbjct: 1 aggaagg 7
>mmu-miR-7685-5p MIMAT0029896 Mus musculus miR-7685-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggaaggt 8
|||||||
Sbjct: 7 ggaaggt 1
>lja-miR7530 MIMAT0029353 Lotus japonicus miR7530
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaagg 7
|||||||
Sbjct: 7 aggaagg 1
>mdo-miR-7292-5p MIMAT0028568 Monodelphis domestica miR-7292-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaagg 7
|||||||
Sbjct: 2 aggaagg 8
>mdo-miR-7276-5p MIMAT0028526 Monodelphis domestica miR-7276-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaagg 7
|||||||
Sbjct: 8 aggaagg 2
>mmu-miR-7054-5p MIMAT0028012 Mus musculus miR-7054-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaagg 7
|||||||
Sbjct: 2 aggaagg 8
>mmu-miR-6999-5p MIMAT0027900 Mus musculus miR-6999-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaagg 7
|||||||
Sbjct: 2 aggaagg 8
>hsa-miR-6876-5p MIMAT0027652 Homo sapiens miR-6876-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaagg 7
|||||||
Sbjct: 2 aggaagg 8
>mml-miR-4650 MIMAT0024344 Macaca mulatta miR-4650
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggaaggt 8
|||||||
Sbjct: 2 ggaaggt 8
>oar-miR-1197-5p MIMAT0019257 Ovis aries miR-1197-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaagg 7
|||||||
Sbjct: 8 aggaagg 2
>hsa-miR-4476 MIMAT0019003 Homo sapiens miR-4476
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaagg 7
|||||||
Sbjct: 2 aggaagg 8
>tca-miR-3877-5p MIMAT0018846 Tribolium castaneum miR-3877-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggaaggt 8
|||||||
Sbjct: 7 ggaaggt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 172
Number of extensions: 151
Number of successful extensions: 109
Number of sequences better than 100.0: 18
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)