BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-9-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9449 MIMAT0035410 Nematostella vectensis miR-9449 14 27
sma-miR-8475-5p MIMAT0033671 Schistosoma mansoni miR-8475-5p 14 27
bdi-miR7756-3p MIMAT0030257 Brachypodium distachyon miR7756-3p 14 27
hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p 14 27
mtr-miR5298d MIMAT0021372 Medicago truncatula miR5298d 14 27
hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f 14 27
gma-miR2118b-5p MIMAT0022982 Glycine max miR2118b-5p 14 27
gma-miR2118a-5p MIMAT0022981 Glycine max miR2118a-5p 14 27
sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500 14 27
tgu-miR-139-3p MIMAT0014626 Taeniopygia guttata miR-139-3p 14 27
>nve-miR-9449 MIMAT0035410 Nematostella vectensis miR-9449
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggagat 7
|||||||
Sbjct: 8 aggagat 2
>sma-miR-8475-5p MIMAT0033671 Schistosoma mansoni miR-8475-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggagat 7
|||||||
Sbjct: 8 aggagat 2
>bdi-miR7756-3p MIMAT0030257 Brachypodium distachyon miR7756-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggagatg 8
|||||||
Sbjct: 2 ggagatg 8
>hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggagat 7
|||||||
Sbjct: 2 aggagat 8
>mtr-miR5298d MIMAT0021372 Medicago truncatula miR5298d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggagatg 8
|||||||
Sbjct: 2 ggagatg 8
>hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggagatg 8
|||||||
Sbjct: 1 ggagatg 7
>gma-miR2118b-5p MIMAT0022982 Glycine max miR2118b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggagatg 8
|||||||
Sbjct: 1 ggagatg 7
>gma-miR2118a-5p MIMAT0022981 Glycine max miR2118a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggagatg 8
|||||||
Sbjct: 1 ggagatg 7
>sja-miR-3500 MIMAT0016309 Schistosoma japonicum miR-3500
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggagat 7
|||||||
Sbjct: 1 aggagat 7
>tgu-miR-139-3p MIMAT0014626 Taeniopygia guttata miR-139-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggagatg 8
|||||||
Sbjct: 2 ggagatg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 176
Number of extensions: 166
Number of successful extensions: 100
Number of sequences better than 100.0: 10
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
