BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b5-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B14RC-3p MIMAT0031772 Herpes B miR-B14RC-3p 14 27
hsa-miR-6797-5p MIMAT0027494 Homo sapiens miR-6797-5p 14 27
hsa-miR-4779 MIMAT0019938 Homo sapiens miR-4779 14 27
hsa-miR-4667-3p MIMAT0019744 Homo sapiens miR-4667-3p 14 27
pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611 14 27
ame-miR-3776 MIMAT0018553 Apis mellifera miR-3776 14 27
oan-miR-1421y-5p MIMAT0007244 Ornithorhynchus anatinus miR-1421y-5p 14 27
hsa-miR-1249-5p MIMAT0032029 Homo sapiens miR-1249-5p 14 27
mmu-miR-1249-5p MIMAT0014804 Mus musculus miR-1249-5p 14 27
>hbv-miR-B14RC-3p MIMAT0031772 Herpes B miR-B14RC-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaggg 7
|||||||
Sbjct: 1 aggaggg 7
>hsa-miR-6797-5p MIMAT0027494 Homo sapiens miR-6797-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaggg 7
|||||||
Sbjct: 1 aggaggg 7
>hsa-miR-4779 MIMAT0019938 Homo sapiens miR-4779
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaggg 7
|||||||
Sbjct: 2 aggaggg 8
>hsa-miR-4667-3p MIMAT0019744 Homo sapiens miR-4667-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggaggg 7
|||||||
Sbjct: 8 aggaggg 2
>pma-miR-4611 MIMAT0019645 Petromyzon marinus miR-4611
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggagggt 8
|||||||
Sbjct: 2 ggagggt 8
>ame-miR-3776 MIMAT0018553 Apis mellifera miR-3776
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaggg 7
|||||||
Sbjct: 1 aggaggg 7
>oan-miR-1421y-5p MIMAT0007244 Ornithorhynchus anatinus
miR-1421y-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaggg 7
|||||||
Sbjct: 1 aggaggg 7
>hsa-miR-1249-5p MIMAT0032029 Homo sapiens miR-1249-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaggg 7
|||||||
Sbjct: 1 aggaggg 7
>mmu-miR-1249-5p MIMAT0014804 Mus musculus miR-1249-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggaggg 7
|||||||
Sbjct: 1 aggaggg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 167
Number of extensions: 158
Number of successful extensions: 123
Number of sequences better than 100.0: 9
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
