BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bta-miR-2471-5p MIMAT0012061 Bos taurus miR-2471-5p 14 20
gra-miR8635 MIMAT0033985 Gossypium raimondii miR8635 12 80
sma-miR-8421-3p MIMAT0033547 Schistosoma mansoni miR-8421-3p 12 80
str-miR-8384-5p MIMAT0033428 Strongyloides ratti miR-8384-5p 12 80
sja-miR-8185 MIMAT0032784 Schistosoma japonicum miR-8185 12 80
ssa-miR-193-5p MIMAT0032445 Salmo salar miR-193-5p 12 80
prd-miR-58-5p MIMAT0030560 Panagrellus redivivus miR-58-5p 12 80
cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635 12 80
ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491 12 80
mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p 12 80
mml-miR-7185-5p MIMAT0028324 Macaca mulatta miR-7185-5p 12 80
ddi-miR-7095-3p MIMAT0028098 Dictyostelium discoideum miR-7095-3p 12 80
egr-miR-4991 MIMAT0020252 Echinococcus granulosus miR-4991 12 80
pma-miR-429-5p MIMAT0019546 Petromyzon marinus miR-429-5p 12 80
ame-miR-3796 MIMAT0018581 Apis mellifera miR-3796 12 80
mmu-miR-3471 MIMAT0015642 Mus musculus miR-3471 12 80
aae-miR-263b-3p MIMAT0014310 Aedes aegypti miR-263b-3p 12 80
dps-miR-2557-3p MIMAT0012377 Drosophila pseudoobscura miR-2557-3p 12 80
mmu-miR-1967 MIMAT0009440 Mus musculus miR-1967 12 80
gga-miR-1715-5p MIMAT0007611 Gallus gallus miR-1715-5p 12 80
gga-miR-1616 MIMAT0007483 Gallus gallus miR-1616 12 80
mdo-miR-1547-3p MIMAT0026771 Monodelphis domestica miR-1547-3p 12 80
ppt-miR1056 MIMAT0005174 Physcomitrella patens miR1056 12 80
ath-miR850 MIMAT0004272 Arabidopsis thaliana miR850 12 80
>bta-miR-2471-5p MIMAT0012061 Bos taurus miR-2471-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggatct 7
|||||||
Sbjct: 2 aggatct 8
>gra-miR8635 MIMAT0033985 Gossypium raimondii miR8635
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 3 ggatct 8
>sma-miR-8421-3p MIMAT0033547 Schistosoma mansoni miR-8421-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 1 ggatct 6
>str-miR-8384-5p MIMAT0033428 Strongyloides ratti miR-8384-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 3 ggatct 8
>sja-miR-8185 MIMAT0032784 Schistosoma japonicum miR-8185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggatc 6
||||||
Sbjct: 1 aggatc 6
>ssa-miR-193-5p MIMAT0032445 Salmo salar miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 3 ggatct 8
>prd-miR-58-5p MIMAT0030560 Panagrellus redivivus miR-58-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 3 ggatct 8
>cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 3 ggatct 8
>ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 3 ggatct 8
>mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 3 ggatct 8
>mml-miR-7185-5p MIMAT0028324 Macaca mulatta miR-7185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggatc 6
||||||
Sbjct: 3 aggatc 8
>ddi-miR-7095-3p MIMAT0028098 Dictyostelium discoideum
miR-7095-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 1 ggatct 6
>egr-miR-4991 MIMAT0020252 Echinococcus granulosus miR-4991
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggatc 6
||||||
Sbjct: 6 aggatc 1
>pma-miR-429-5p MIMAT0019546 Petromyzon marinus miR-429-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggatc 6
||||||
Sbjct: 6 aggatc 1
>ame-miR-3796 MIMAT0018581 Apis mellifera miR-3796
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggatc 6
||||||
Sbjct: 6 aggatc 1
>mmu-miR-3471 MIMAT0015642 Mus musculus miR-3471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggatct 7
||||||
Sbjct: 8 ggatct 3
>aae-miR-263b-3p MIMAT0014310 Aedes aegypti miR-263b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 2 ggatct 7
>dps-miR-2557-3p MIMAT0012377 Drosophila pseudoobscura
miR-2557-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggatct 7
||||||
Sbjct: 8 ggatct 3
>mmu-miR-1967 MIMAT0009440 Mus musculus miR-1967
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggatc 6
||||||
Sbjct: 3 aggatc 8
>gga-miR-1715-5p MIMAT0007611 Gallus gallus miR-1715-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggatc 6
||||||
Sbjct: 1 aggatc 6
>gga-miR-1616 MIMAT0007483 Gallus gallus miR-1616
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggatc 6
||||||
Sbjct: 8 aggatc 3
>mdo-miR-1547-3p MIMAT0026771 Monodelphis domestica miR-1547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggatc 6
||||||
Sbjct: 3 aggatc 8
>ppt-miR1056 MIMAT0005174 Physcomitrella patens miR1056
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggatct 7
||||||
Sbjct: 2 ggatct 7
>ath-miR850 MIMAT0004272 Arabidopsis thaliana miR850
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggatct 7
||||||
Sbjct: 8 ggatct 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 35
Number of extensions: 34
Number of successful extensions: 24
Number of sequences better than 100.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
