BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh96-2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B12 MIMAT0035709 Bovine herpesvirus miR-B12 14 20
prd-miR-7923-5p MIMAT0030690 Panagrellus redivivus miR-7923-5p 14 20
mdo-miR-7306-3p MIMAT0028607 Monodelphis domestica miR-7306-3p 14 20
pde-miR1314 MIMAT0025351 Pinus densata miR1314 14 20
nvi-miR-2796 MIMAT0015680 Nasonia vitripennis miR-2796 14 20
efu-miR-9279b MIMAT0035019 Eptesicus fuscus miR-9279b 12 80
ppc-miR-235-5p MIMAT0032854 Pristionchus pacificus miR-235-5p 12 80
ath-miR8176 MIMAT0032775 Arabidopsis thaliana miR8176 12 80
ssa-miR-8159-3p MIMAT0032743 Salmo salar miR-8159-3p 12 80
prd-miR-84-3p MIMAT0030471 Panagrellus redivivus miR-84-3p 12 80
hsa-miR-6781-5p MIMAT0027462 Homo sapiens miR-6781-5p 12 80
hme-miR-2796 MIMAT0024962 Heliconius melpomene miR-2796 12 80
mse-miR-2796 MIMAT0024461 Manduca sexta miR-2796 12 80
hsa-miR-6089 MIMAT0023714 Homo sapiens miR-6089 12 80
asu-miR-92-5p MIMAT0021485 Ascaris suum miR-92-5p 12 80
bdi-miR5059 MIMAT0020560 Brachypodium distachyon miR5059 12 80
dme-miR-4981-3p MIMAT0020214 Drosophila melanogaster miR-4981-3p 12 80
tca-miR-3879-3p MIMAT0018851 Tribolium castaneum miR-3879-3p 12 80
tca-miR-3850-5p MIMAT0018754 Tribolium castaneum miR-3850-5p 12 80
tca-miR-2796-3p MIMAT0018713 Tribolium castaneum miR-2796-3p 12 80
ame-miR-2796 MIMAT0018591 Apis mellifera miR-2796 12 80
ame-miR-3800 MIMAT0018587 Apis mellifera miR-3800 12 80
ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295 12 80
api-miR-2796 MIMAT0014790 Acyrthosiphon pisum miR-2796 12 80
hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p 12 80
cqu-miR-100-3p MIMAT0014388 Culex quinquefasciatus miR-100-3p 12 80
bmo-miR-2796-3p MIMAT0013697 Bombyx mori miR-2796-3p 12 80
dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p 12 80
cbr-miR-90b-5p MIMAT0011471 Caenorhabditis briggsae miR-90b-5p 12 80
dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p 12 80
ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295 12 80
hsa-miR-1908-3p MIMAT0026916 Homo sapiens miR-1908-3p 12 80
oan-miR-1420g-5p MIMAT0007318 Ornithorhynchus anatinus miR-1420g-5p 12 80
hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a 12 80
cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii miR1162-5p 12 80
dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p 12 80
>bhv5-miR-B12 MIMAT0035709 Bovine herpesvirus miR-B12
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggccgg 7
|||||||
Sbjct: 2 aggccgg 8
>prd-miR-7923-5p MIMAT0030690 Panagrellus redivivus miR-7923-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggccgg 7
|||||||
Sbjct: 7 aggccgg 1
>mdo-miR-7306-3p MIMAT0028607 Monodelphis domestica miR-7306-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggccgg 7
|||||||
Sbjct: 8 aggccgg 2
>pde-miR1314 MIMAT0025351 Pinus densata miR1314
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggccgg 7
|||||||
Sbjct: 7 aggccgg 1
>nvi-miR-2796 MIMAT0015680 Nasonia vitripennis miR-2796
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggccgg 7
|||||||
Sbjct: 1 aggccgg 7
>efu-miR-9279b MIMAT0035019 Eptesicus fuscus miR-9279b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>ppc-miR-235-5p MIMAT0032854 Pristionchus pacificus miR-235-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 1 aggccg 6
>ath-miR8176 MIMAT0032775 Arabidopsis thaliana miR8176
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggccgg 7
||||||
Sbjct: 1 ggccgg 6
>ssa-miR-8159-3p MIMAT0032743 Salmo salar miR-8159-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggccgg 7
||||||
Sbjct: 3 ggccgg 8
>prd-miR-84-3p MIMAT0030471 Panagrellus redivivus miR-84-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggccg 6
||||||
Sbjct: 6 aggccg 1
>hsa-miR-6781-5p MIMAT0027462 Homo sapiens miR-6781-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggccgg 7
||||||
Sbjct: 3 ggccgg 8
>hme-miR-2796 MIMAT0024962 Heliconius melpomene miR-2796
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>mse-miR-2796 MIMAT0024461 Manduca sexta miR-2796
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>hsa-miR-6089 MIMAT0023714 Homo sapiens miR-6089
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>asu-miR-92-5p MIMAT0021485 Ascaris suum miR-92-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 1 aggccg 6
>bdi-miR5059 MIMAT0020560 Brachypodium distachyon miR5059
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggccg 6
||||||
Sbjct: 6 aggccg 1
>dme-miR-4981-3p MIMAT0020214 Drosophila melanogaster
miR-4981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggccgg 7
||||||
Sbjct: 3 ggccgg 8
>tca-miR-3879-3p MIMAT0018851 Tribolium castaneum miR-3879-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggccgg 7
||||||
Sbjct: 8 ggccgg 3
>tca-miR-3850-5p MIMAT0018754 Tribolium castaneum miR-3850-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 1 aggccg 6
>tca-miR-2796-3p MIMAT0018713 Tribolium castaneum miR-2796-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>ame-miR-2796 MIMAT0018591 Apis mellifera miR-2796
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>ame-miR-3800 MIMAT0018587 Apis mellifera miR-3800
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>api-miR-2796 MIMAT0014790 Acyrthosiphon pisum miR-2796
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 1 aggccg 6
>cqu-miR-100-3p MIMAT0014388 Culex quinquefasciatus miR-100-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>bmo-miR-2796-3p MIMAT0013697 Bombyx mori miR-2796-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 1 aggccg 6
>cbr-miR-90b-5p MIMAT0011471 Caenorhabditis briggsae miR-90b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggccg 6
||||||
Sbjct: 6 aggccg 1
>dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 1 aggccg 6
>ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>hsa-miR-1908-3p MIMAT0026916 Homo sapiens miR-1908-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggccgg 7
||||||
Sbjct: 6 ggccgg 1
>oan-miR-1420g-5p MIMAT0007318 Ornithorhynchus anatinus
miR-1420g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggccgg 7
||||||
Sbjct: 8 ggccgg 3
>hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 3 aggccg 8
>cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii
miR1162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggccg 6
||||||
Sbjct: 6 aggccg 1
>dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggccg 6
||||||
Sbjct: 1 aggccg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 61
Number of extensions: 56
Number of successful extensions: 36
Number of sequences better than 100.0: 36
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 36
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
