BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h23
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p 16 6.9
dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p 16 6.9
dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p 16 6.9
dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p 16 6.9
atr-miR8552c MIMAT0033866 Amborella trichopoda miR8552c 14 27
ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p 14 27
mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p 14 27
ssc-miR-4332 MIMAT0017962 Sus scrofa miR-4332 14 27
dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p 14 27
>hsv2-miR-H23-5p MIMAT0014705 Herpes Simplex miR-H23-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggccgtg 8
||||||||
Sbjct: 1 aggccgtg 8
>dps-miR-92c-5p MIMAT0012243 Drosophila pseudoobscura miR-92c-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggccgtg 8
||||||||
Sbjct: 1 aggccgtg 8
>dvi-miR-310-5p MIMAT0032060 Drosophila virilis miR-310-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggccgtg 8
||||||||
Sbjct: 1 aggccgtg 8
>dme-miR-92b-5p MIMAT0020819 Drosophila melanogaster miR-92b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggccgtg 8
||||||||
Sbjct: 1 aggccgtg 8
>atr-miR8552c MIMAT0033866 Amborella trichopoda miR8552c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggccgtg 8
|||||||
Sbjct: 1 ggccgtg 7
>ssa-miR-15d-3p MIMAT0032402 Salmo salar miR-15d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggccgt 7
|||||||
Sbjct: 2 aggccgt 8
>mml-miR-7165-3p MIMAT0028263 Macaca mulatta miR-7165-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggccgt 7
|||||||
Sbjct: 7 aggccgt 1
>ssc-miR-4332 MIMAT0017962 Sus scrofa miR-4332
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggccgtg 8
|||||||
Sbjct: 7 ggccgtg 1
>dre-miR-15a-3p MIMAT0003395 Danio rerio miR-15a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggccgt 7
|||||||
Sbjct: 2 aggccgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 65
Number of successful extensions: 44
Number of sequences better than 100.0: 9
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
