BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-21-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
atr-miR477 MIMAT0033946 Amborella trichopoda miR477 16 6.9
mml-miR-7172-5p MIMAT0028282 Macaca mulatta miR-7172-5p 16 6.9
hsa-miR-4757-5p MIMAT0019901 Homo sapiens miR-4757-5p 16 6.9
rlcv-miR-rL1-21-3p MIMAT0016943 Rhesus lymphocryptovirus miR-rL1... 16 6.9
gga-miR-1617 MIMAT0007484 Gallus gallus miR-1617 16 6.9
efu-miR-9267 MIMAT0034897 Eptesicus fuscus miR-9267 14 27
mml-miR-7180-3p MIMAT0028305 Macaca mulatta miR-7180-3p 14 27
hsa-miR-6744-3p MIMAT0027390 Homo sapiens miR-6744-3p 14 27
gma-miR5036 MIMAT0021059 Glycine max miR5036 14 27
pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p 14 27
cin-miR-4000e-3p MIMAT0016435 Ciona intestinalis miR-4000e-3p 14 27
ptc-miR473a-3p MIMAT0022914 Populus trichocarpa miR473a-3p 14 27
>atr-miR477 MIMAT0033946 Amborella trichopoda miR477
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aggcctct 8
||||||||
Sbjct: 8 aggcctct 1
>mml-miR-7172-5p MIMAT0028282 Macaca mulatta miR-7172-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggcctct 8
||||||||
Sbjct: 1 aggcctct 8
>hsa-miR-4757-5p MIMAT0019901 Homo sapiens miR-4757-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggcctct 8
||||||||
Sbjct: 1 aggcctct 8
>rlcv-miR-rL1-21-3p MIMAT0016943 Rhesus lymphocryptovirus
miR-rL1-21-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggcctct 8
||||||||
Sbjct: 1 aggcctct 8
>gga-miR-1617 MIMAT0007484 Gallus gallus miR-1617
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 aggcctct 8
||||||||
Sbjct: 8 aggcctct 1
>efu-miR-9267 MIMAT0034897 Eptesicus fuscus miR-9267
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggcctc 7
|||||||
Sbjct: 8 aggcctc 2
>mml-miR-7180-3p MIMAT0028305 Macaca mulatta miR-7180-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggcctct 8
|||||||
Sbjct: 2 ggcctct 8
>hsa-miR-6744-3p MIMAT0027390 Homo sapiens miR-6744-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggcctct 8
|||||||
Sbjct: 2 ggcctct 8
>gma-miR5036 MIMAT0021059 Glycine max miR5036
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggcctct 8
|||||||
Sbjct: 7 ggcctct 1
>pma-miR-103b-5p MIMAT0019442 Petromyzon marinus miR-103b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggcctct 8
|||||||
Sbjct: 1 ggcctct 7
>cin-miR-4000e-3p MIMAT0016435 Ciona intestinalis miR-4000e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggcctct 8
|||||||
Sbjct: 1 ggcctct 7
>ptc-miR473a-3p MIMAT0022914 Populus trichocarpa miR473a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggcctc 7
|||||||
Sbjct: 8 aggcctc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 164
Number of extensions: 147
Number of successful extensions: 126
Number of sequences better than 100.0: 12
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
