BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-7109-3p MIMAT0028116 Homo sapiens miR-7109-3p 14 20
mmu-miR-7022-3p MIMAT0027949 Mus musculus miR-7022-3p 14 20
cin-miR-4052-5p MIMAT0016593 Ciona intestinalis miR-4052-5p 14 20
sme-miR-753e-5p MIMAT0012168 Schmidtea mediterranea miR-753e-5p 14 20
sme-miR-753b-5p MIMAT0011395 Schmidtea mediterranea miR-753b-5p 14 20
osa-miR168b MIMAT0001046 Oryza sativa miR168b 14 20
ata-miR5200-5p MIMAT0037138 Aegilops tauschii miR5200-5p 12 80
oha-miR-1788-5p MIMAT0036753 Ophiophagus hannah miR-1788-5p 12 80
gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p 12 80
efu-miR-9357 MIMAT0035150 Eptesicus fuscus miR-9357 12 80
eca-miR-9184 MIMAT0034765 Equus caballus miR-9184 12 80
eca-miR-9072 MIMAT0034617 Equus caballus miR-9072 12 80
gra-miR8728 MIMAT0034259 Gossypium raimondii miR8728 12 80
ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p 12 80
ssa-miR-1788-5p MIMAT0032412 Salmo salar miR-1788-5p 12 80
ppe-miR477-3p MIMAT0031541 Prunus persica miR477-3p 12 80
stu-miR7985 MIMAT0030854 Solanum tuberosum miR7985 12 80
hhi-miR-1788 MIMAT0030352 Hippoglossus hippoglossus miR-1788 12 80
mmu-miR-129b-3p MIMAT0029863 Mus musculus miR-129b-3p 12 80
ipu-miR-1788 MIMAT0029433 Ictalurus punctatus miR-1788 12 80
mdo-miR-7337-5p MIMAT0028682 Monodelphis domestica miR-7337-5p 12 80
hsa-miR-6819-3p MIMAT0027539 Homo sapiens miR-6819-3p 12 80
tgu-miR-1788 MIMAT0025407 Taeniopygia guttata miR-1788 12 80
pde-miR482c MIMAT0025335 Pinus densata miR482c 12 80
ppy-miR-3188 MIMAT0024401 Pongo pygmaeus miR-3188 12 80
bra-miR5713 MIMAT0023010 Brassica rapa miR5713 12 80
ath-miR5643b MIMAT0022445 Arabidopsis thaliana miR5643b 12 80
ath-miR5643a MIMAT0022404 Arabidopsis thaliana miR5643a 12 80
aca-miR-497-3p MIMAT0021979 Anolis carolinensis miR-497-3p 12 80
aca-miR-1788-5p MIMAT0021805 Anolis carolinensis miR-1788-5p 12 80
pma-miR-1788a-5p MIMAT0019561 Petromyzon marinus miR-1788a-5p 12 80
smr-miR-282 MIMAT0018915 Strigamia maritima miR-282 12 80
ame-miR-3747a MIMAT0018515 Apis mellifera miR-3747a 12 80
pab-miR482d MIMAT0018150 Picea abies miR482d 12 80
hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327 12 80
cin-miR-4057-5p MIMAT0016603 Ciona intestinalis miR-4057-5p 12 80
ppy-miR-596 MIMAT0016038 Pongo pygmaeus miR-596 12 80
hsa-miR-3188 MIMAT0015070 Homo sapiens miR-3188 12 80
mmu-miR-3078-5p MIMAT0014864 Mus musculus miR-3078-5p 12 80
tgu-miR-2971 MIMAT0014481 Taeniopygia guttata miR-2971 12 80
ptr-miR-596 MIMAT0012807 Pan troglodytes miR-596 12 80
bmo-miR-2760-5p MIMAT0013632 Bombyx mori miR-2760-5p 12 80
bta-miR-2330-5p MIMAT0011861 Bos taurus miR-2330-5p 12 80
dre-miR-1788-5p MIMAT0011294 Danio rerio miR-1788-5p 12 80
cel-miR-1833 MIMAT0006775 Caenorhabditis elegans miR-1833 12 80
gga-miR-1788-5p MIMAT0007700 Gallus gallus miR-1788-5p 12 80
gga-miR-1728-3p MIMAT0007628 Gallus gallus miR-1728-3p 12 80
rno-miR-879-5p MIMAT0005287 Rattus norvegicus miR-879-5p 12 80
smo-miR1081 MIMAT0005231 Selaginella moellendorffii miR1081 12 80
ppt-miR477a-3p MIMAT0003899 Physcomitrella patens miR477a-3p 12 80
mmu-miR-879-5p MIMAT0004842 Mus musculus miR-879-5p 12 80
hsa-miR-596 MIMAT0003264 Homo sapiens miR-596 12 80
kshv-miR-K12-10a-5p MIMAT0015212 Kaposi sarcoma-associated miR-K... 12 80
>hsa-miR-7109-3p MIMAT0028116 Homo sapiens miR-7109-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggcttg 7
|||||||
Sbjct: 7 aggcttg 1
>mmu-miR-7022-3p MIMAT0027949 Mus musculus miR-7022-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggcttg 7
|||||||
Sbjct: 8 aggcttg 2
>cin-miR-4052-5p MIMAT0016593 Ciona intestinalis miR-4052-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggcttg 7
|||||||
Sbjct: 2 aggcttg 8
>sme-miR-753e-5p MIMAT0012168 Schmidtea mediterranea miR-753e-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggcttg 7
|||||||
Sbjct: 1 aggcttg 7
>sme-miR-753b-5p MIMAT0011395 Schmidtea mediterranea miR-753b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggcttg 7
|||||||
Sbjct: 1 aggcttg 7
>osa-miR168b MIMAT0001046 Oryza sativa miR168b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggcttg 7
|||||||
Sbjct: 1 aggcttg 7
>ata-miR5200-5p MIMAT0037138 Aegilops tauschii miR5200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 6 aggctt 1
>oha-miR-1788-5p MIMAT0036753 Ophiophagus hannah miR-1788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>efu-miR-9357 MIMAT0035150 Eptesicus fuscus miR-9357
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcttg 7
||||||
Sbjct: 8 ggcttg 3
>eca-miR-9184 MIMAT0034765 Equus caballus miR-9184
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>eca-miR-9072 MIMAT0034617 Equus caballus miR-9072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 8 aggctt 3
>gra-miR8728 MIMAT0034259 Gossypium raimondii miR8728
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 3 ggcttg 8
>ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 1 aggctt 6
>ssa-miR-1788-5p MIMAT0032412 Salmo salar miR-1788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>ppe-miR477-3p MIMAT0031541 Prunus persica miR477-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 8 aggctt 3
>stu-miR7985 MIMAT0030854 Solanum tuberosum miR7985
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 3 ggcttg 8
>hhi-miR-1788 MIMAT0030352 Hippoglossus hippoglossus miR-1788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>mmu-miR-129b-3p MIMAT0029863 Mus musculus miR-129b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcttg 7
||||||
Sbjct: 6 ggcttg 1
>ipu-miR-1788 MIMAT0029433 Ictalurus punctatus miR-1788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>mdo-miR-7337-5p MIMAT0028682 Monodelphis domestica miR-7337-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 6 aggctt 1
>hsa-miR-6819-3p MIMAT0027539 Homo sapiens miR-6819-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 6 aggctt 1
>tgu-miR-1788 MIMAT0025407 Taeniopygia guttata miR-1788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>pde-miR482c MIMAT0025335 Pinus densata miR482c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>ppy-miR-3188 MIMAT0024401 Pongo pygmaeus miR-3188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>bra-miR5713 MIMAT0023010 Brassica rapa miR5713
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 1 aggctt 6
>ath-miR5643b MIMAT0022445 Arabidopsis thaliana miR5643b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 1 aggctt 6
>ath-miR5643a MIMAT0022404 Arabidopsis thaliana miR5643a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 1 aggctt 6
>aca-miR-497-3p MIMAT0021979 Anolis carolinensis miR-497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggcttg 7
||||||
Sbjct: 6 ggcttg 1
>aca-miR-1788-5p MIMAT0021805 Anolis carolinensis miR-1788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>pma-miR-1788a-5p MIMAT0019561 Petromyzon marinus miR-1788a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>smr-miR-282 MIMAT0018915 Strigamia maritima miR-282
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 6 aggctt 1
>ame-miR-3747a MIMAT0018515 Apis mellifera miR-3747a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>pab-miR482d MIMAT0018150 Picea abies miR482d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>hsa-miR-4327 MIMAT0016889 Homo sapiens miR-4327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>cin-miR-4057-5p MIMAT0016603 Ciona intestinalis miR-4057-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>ppy-miR-596 MIMAT0016038 Pongo pygmaeus miR-596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 6 aggctt 1
>hsa-miR-3188 MIMAT0015070 Homo sapiens miR-3188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>mmu-miR-3078-5p MIMAT0014864 Mus musculus miR-3078-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 8 aggctt 3
>tgu-miR-2971 MIMAT0014481 Taeniopygia guttata miR-2971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 8 aggctt 3
>ptr-miR-596 MIMAT0012807 Pan troglodytes miR-596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 6 aggctt 1
>bmo-miR-2760-5p MIMAT0013632 Bombyx mori miR-2760-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>bta-miR-2330-5p MIMAT0011861 Bos taurus miR-2330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 3 ggcttg 8
>dre-miR-1788-5p MIMAT0011294 Danio rerio miR-1788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>cel-miR-1833 MIMAT0006775 Caenorhabditis elegans miR-1833
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>gga-miR-1788-5p MIMAT0007700 Gallus gallus miR-1788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
>gga-miR-1728-3p MIMAT0007628 Gallus gallus miR-1728-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 1 aggctt 6
>rno-miR-879-5p MIMAT0005287 Rattus norvegicus miR-879-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>smo-miR1081 MIMAT0005231 Selaginella moellendorffii miR1081
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>ppt-miR477a-3p MIMAT0003899 Physcomitrella patens miR477a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 8 aggctt 3
>mmu-miR-879-5p MIMAT0004842 Mus musculus miR-879-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggctt 6
||||||
Sbjct: 3 aggctt 8
>hsa-miR-596 MIMAT0003264 Homo sapiens miR-596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggctt 6
||||||
Sbjct: 6 aggctt 1
>kshv-miR-K12-10a-5p MIMAT0015212 Kaposi sarcoma-associated
miR-K12-10a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggcttg 7
||||||
Sbjct: 1 ggcttg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 65
Number of successful extensions: 53
Number of sequences better than 100.0: 53
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 53
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
