BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-6
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-342-5p MIMAT0036157 Capra hircus miR-342-5p 14 20
rgl-miR7804-5p MIMAT0032245 Rehmannia glutinosa miR7804-5p 14 20
mmu-miR-6978-5p MIMAT0027858 Mus musculus miR-6978-5p 14 20
hsa-miR-6782-5p MIMAT0027464 Homo sapiens miR-6782-5p 14 20
hsa-miR-6747-5p MIMAT0027394 Homo sapiens miR-6747-5p 14 20
cgr-miR-342-5p MIMAT0023922 Cricetulus griseus miR-342-5p 14 20
ppy-miR-608 MIMAT0016049 Pongo pygmaeus miR-608 14 20
ppy-miR-342-5p MIMAT0015844 Pongo pygmaeus miR-342-5p 14 20
eca-miR-342-5p MIMAT0013136 Equus caballus miR-342-5p 14 20
mml-miR-342-5p MIMAT0006282 Macaca mulatta miR-342-5p 14 20
hsa-miR-608 MIMAT0003276 Homo sapiens miR-608 14 20
hsa-miR-342-5p MIMAT0004694 Homo sapiens miR-342-5p 14 20
mmu-miR-342-5p MIMAT0004653 Mus musculus miR-342-5p 14 20
rno-miR-342-5p MIMAT0004652 Rattus norvegicus miR-342-5p 14 20
oha-miR-204-2-3p MIMAT0036814 Ophiophagus hannah miR-204-2-3p 12 80
efu-miR-9223i MIMAT0034824 Eptesicus fuscus miR-9223i 12 80
ath-miR8181 MIMAT0032780 Arabidopsis thaliana miR8181 12 80
stu-miR8004 MIMAT0030894 Solanum tuberosum miR8004 12 80
prd-miR-7887-5p MIMAT0030544 Panagrellus redivivus miR-7887-5p 12 80
mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p 12 80
hsa-miR-7110-5p MIMAT0028117 Homo sapiens miR-7110-5p 12 80
mmu-miR-7091-5p MIMAT0028088 Mus musculus miR-7091-5p 12 80
mmu-miR-7006-5p MIMAT0027916 Mus musculus miR-7006-5p 12 80
mmu-miR-6988-5p MIMAT0027878 Mus musculus miR-6988-5p 12 80
mmu-miR-6964-5p MIMAT0027828 Mus musculus miR-6964-5p 12 80
hsa-miR-6846-3p MIMAT0027593 Homo sapiens miR-6846-3p 12 80
hsa-miR-6842-5p MIMAT0027586 Homo sapiens miR-6842-5p 12 80
hsa-miR-6819-5p MIMAT0027538 Homo sapiens miR-6819-5p 12 80
hsa-miR-6812-5p MIMAT0027524 Homo sapiens miR-6812-5p 12 80
hsa-miR-6802-3p MIMAT0027505 Homo sapiens miR-6802-3p 12 80
hsa-miR-6801-3p MIMAT0027503 Homo sapiens miR-6801-3p 12 80
hsa-miR-6795-3p MIMAT0027491 Homo sapiens miR-6795-3p 12 80
hsa-miR-6752-5p MIMAT0027404 Homo sapiens miR-6752-5p 12 80
hsa-miR-6738-5p MIMAT0027377 Homo sapiens miR-6738-5p 12 80
hsa-miR-6737-5p MIMAT0027375 Homo sapiens miR-6737-5p 12 80
gga-miR-6594-5p MIMAT0025688 Gallus gallus miR-6594-5p 12 80
gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p 12 80
hco-miR-5890f-3p MIMAT0023410 Haemonchus contortus miR-5890f-3p 12 80
hco-miR-5890d MIMAT0023393 Haemonchus contortus miR-5890d 12 80
mtr-miR5259 MIMAT0021259 Medicago truncatula miR5259 12 80
hsa-miR-5194 MIMAT0021125 Homo sapiens miR-5194 12 80
osa-miR5148c MIMAT0021096 Oryza sativa miR5148c 12 80
osa-miR5148b MIMAT0021095 Oryza sativa miR5148b 12 80
osa-miR5148a MIMAT0021094 Oryza sativa miR5148a 12 80
hsa-miR-4640-3p MIMAT0019700 Homo sapiens miR-4640-3p 12 80
pma-miR-4619 MIMAT0019653 Petromyzon marinus miR-4619 12 80
oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p 12 80
hsa-miR-4483 MIMAT0019017 Homo sapiens miR-4483 12 80
hsa-miR-3936 MIMAT0018351 Homo sapiens miR-3936 12 80
tca-miR-3900-5p MIMAT0018904 Tribolium castaneum miR-3900-5p 12 80
tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p 12 80
tca-miR-3817-5p MIMAT0018658 Tribolium castaneum miR-3817-5p 12 80
rno-miR-409b MIMAT0017870 Rattus norvegicus miR-409b 12 80
mmu-miR-3093-5p MIMAT0014907 Mus musculus miR-3093-5p 12 80
hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22 12 80
hsv2-miR-H7-5p MIMAT0014351 Herpes Simplex miR-H7-5p 12 80
bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p 12 80
hsv1-miR-H7-5p MIMAT0012595 Herpes Simplex miR-H7-5p 12 80
dsi-miR-965-5p MIMAT0012471 Drosophila simulans miR-965-5p 12 80
bta-miR-2431-3p MIMAT0012002 Bos taurus miR-2431-3p 12 80
bta-miR-2305 MIMAT0011817 Bos taurus miR-2305 12 80
bta-miR-2295 MIMAT0011803 Bos taurus miR-2295 12 80
hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p 12 80
cel-miR-1823-5p MIMAT0032035 Caenorhabditis elegans miR-1823-5p 12 80
cre-miR1167 MIMAT0005434 Chlamydomonas reinhardtii miR1167 12 80
cre-miR1151a-3p MIMAT0005394 Chlamydomonas reinhardtii miR1151a-3p 12 80
ppt-miR1055 MIMAT0005173 Physcomitrella patens miR1055 12 80
hsv1-miR-H1-3p MIMAT0015220 Herpes Simplex miR-H1-3p 12 80
>chi-miR-342-5p MIMAT0036157 Capra hircus miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>rgl-miR7804-5p MIMAT0032245 Rehmannia glutinosa miR7804-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>mmu-miR-6978-5p MIMAT0027858 Mus musculus miR-6978-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 2 aggggtg 8
>hsa-miR-6782-5p MIMAT0027464 Homo sapiens miR-6782-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 2 aggggtg 8
>hsa-miR-6747-5p MIMAT0027394 Homo sapiens miR-6747-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>cgr-miR-342-5p MIMAT0023922 Cricetulus griseus miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>ppy-miR-608 MIMAT0016049 Pongo pygmaeus miR-608
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>ppy-miR-342-5p MIMAT0015844 Pongo pygmaeus miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>eca-miR-342-5p MIMAT0013136 Equus caballus miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>mml-miR-342-5p MIMAT0006282 Macaca mulatta miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>hsa-miR-608 MIMAT0003276 Homo sapiens miR-608
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>hsa-miR-342-5p MIMAT0004694 Homo sapiens miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>mmu-miR-342-5p MIMAT0004653 Mus musculus miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>rno-miR-342-5p MIMAT0004652 Rattus norvegicus miR-342-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtg 7
|||||||
Sbjct: 1 aggggtg 7
>oha-miR-204-2-3p MIMAT0036814 Ophiophagus hannah miR-204-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>efu-miR-9223i MIMAT0034824 Eptesicus fuscus miR-9223i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggtg 7
||||||
Sbjct: 8 ggggtg 3
>ath-miR8181 MIMAT0032780 Arabidopsis thaliana miR8181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>stu-miR8004 MIMAT0030894 Solanum tuberosum miR8004
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 1 aggggt 6
>prd-miR-7887-5p MIMAT0030544 Panagrellus redivivus miR-7887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 1 ggggtg 6
>mdo-miR-7327-5p MIMAT0028656 Monodelphis domestica miR-7327-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>hsa-miR-7110-5p MIMAT0028117 Homo sapiens miR-7110-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>mmu-miR-7091-5p MIMAT0028088 Mus musculus miR-7091-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>mmu-miR-7006-5p MIMAT0027916 Mus musculus miR-7006-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>mmu-miR-6988-5p MIMAT0027878 Mus musculus miR-6988-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 1 ggggtg 6
>mmu-miR-6964-5p MIMAT0027828 Mus musculus miR-6964-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>hsa-miR-6846-3p MIMAT0027593 Homo sapiens miR-6846-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggggt 6
||||||
Sbjct: 8 aggggt 3
>hsa-miR-6842-5p MIMAT0027586 Homo sapiens miR-6842-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>hsa-miR-6819-5p MIMAT0027538 Homo sapiens miR-6819-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>hsa-miR-6812-5p MIMAT0027524 Homo sapiens miR-6812-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>hsa-miR-6802-3p MIMAT0027505 Homo sapiens miR-6802-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggtg 7
||||||
Sbjct: 8 ggggtg 3
>hsa-miR-6801-3p MIMAT0027503 Homo sapiens miR-6801-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggggt 6
||||||
Sbjct: 6 aggggt 1
>hsa-miR-6795-3p MIMAT0027491 Homo sapiens miR-6795-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggggt 6
||||||
Sbjct: 6 aggggt 1
>hsa-miR-6752-5p MIMAT0027404 Homo sapiens miR-6752-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>hsa-miR-6738-5p MIMAT0027377 Homo sapiens miR-6738-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>hsa-miR-6737-5p MIMAT0027375 Homo sapiens miR-6737-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>gga-miR-6594-5p MIMAT0025688 Gallus gallus miR-6594-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>gga-miR-6547-3p MIMAT0025598 Gallus gallus miR-6547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggggt 6
||||||
Sbjct: 6 aggggt 1
>hco-miR-5890f-3p MIMAT0023410 Haemonchus contortus miR-5890f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggggt 6
||||||
Sbjct: 8 aggggt 3
>hco-miR-5890d MIMAT0023393 Haemonchus contortus miR-5890d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggggt 6
||||||
Sbjct: 8 aggggt 3
>mtr-miR5259 MIMAT0021259 Medicago truncatula miR5259
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>hsa-miR-5194 MIMAT0021125 Homo sapiens miR-5194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>osa-miR5148c MIMAT0021096 Oryza sativa miR5148c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>osa-miR5148b MIMAT0021095 Oryza sativa miR5148b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>osa-miR5148a MIMAT0021094 Oryza sativa miR5148a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>hsa-miR-4640-3p MIMAT0019700 Homo sapiens miR-4640-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggtg 7
||||||
Sbjct: 6 ggggtg 1
>pma-miR-4619 MIMAT0019653 Petromyzon marinus miR-4619
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggtg 7
||||||
Sbjct: 6 ggggtg 1
>oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 1 aggggt 6
>hsa-miR-4483 MIMAT0019017 Homo sapiens miR-4483
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 1 ggggtg 6
>hsa-miR-3936 MIMAT0018351 Homo sapiens miR-3936
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>tca-miR-3900-5p MIMAT0018904 Tribolium castaneum miR-3900-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 1 aggggt 6
>tca-miR-3817-5p MIMAT0018658 Tribolium castaneum miR-3817-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>rno-miR-409b MIMAT0017870 Rattus norvegicus miR-409b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 1 aggggt 6
>mmu-miR-3093-5p MIMAT0014907 Mus musculus miR-3093-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggtg 7
||||||
Sbjct: 8 ggggtg 3
>hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 1 aggggt 6
>hsv2-miR-H7-5p MIMAT0014351 Herpes Simplex miR-H7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 1 aggggt 6
>hsv1-miR-H7-5p MIMAT0012595 Herpes Simplex miR-H7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>dsi-miR-965-5p MIMAT0012471 Drosophila simulans miR-965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 1 ggggtg 6
>bta-miR-2431-3p MIMAT0012002 Bos taurus miR-2431-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggtg 7
||||||
Sbjct: 6 ggggtg 1
>bta-miR-2305 MIMAT0011817 Bos taurus miR-2305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>bta-miR-2295 MIMAT0011803 Bos taurus miR-2295
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>hsa-miR-1914-3p MIMAT0007890 Homo sapiens miR-1914-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>cel-miR-1823-5p MIMAT0032035 Caenorhabditis elegans miR-1823-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggggt 6
||||||
Sbjct: 6 aggggt 1
>cre-miR1167 MIMAT0005434 Chlamydomonas reinhardtii miR1167
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 1 ggggtg 6
>cre-miR1151a-3p MIMAT0005394 Chlamydomonas reinhardtii
miR1151a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggtg 7
||||||
Sbjct: 3 ggggtg 8
>ppt-miR1055 MIMAT0005173 Physcomitrella patens miR1055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggggt 6
||||||
Sbjct: 3 aggggt 8
>hsv1-miR-H1-3p MIMAT0015220 Herpes Simplex miR-H1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggtg 7
||||||
Sbjct: 8 ggggtg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 96
Number of extensions: 82
Number of successful extensions: 68
Number of sequences better than 100.0: 68
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
