BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r43.1-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-409b MIMAT0017870 Rattus norvegicus miR-409b 16 6.9
oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p 14 27
stu-miR8004 MIMAT0030894 Solanum tuberosum miR8004 14 27
mmu-miR-7020-3p MIMAT0027945 Mus musculus miR-7020-3p 14 27
cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p 14 27
aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p 14 27
hsa-miR-5195-5p MIMAT0021126 Homo sapiens miR-5195-5p 14 27
bdi-miR395d-5p MIMAT0027082 Brachypodium distachyon miR395d-5p 14 27
pma-miR-23a-5p MIMAT0019402 Petromyzon marinus miR-23a-5p 14 27
tca-miR-3892-5p MIMAT0018884 Tribolium castaneum miR-3892-5p 14 27
tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p 14 27
bta-miR-409b MIMAT0016935 Bos taurus miR-409b 14 27
ppy-miR-615-5p MIMAT0016056 Pongo pygmaeus miR-615-5p 14 27
osa-miR2872 MIMAT0013822 Oryza sativa miR2872 14 27
bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p 14 27
oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p 14 27
rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p 14 27
mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p 14 27
hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p 14 27
>rno-miR-409b MIMAT0017870 Rattus norvegicus miR-409b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aggggttc 8
||||||||
Sbjct: 1 aggggttc 8
>oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
>stu-miR8004 MIMAT0030894 Solanum tuberosum miR8004
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtt 7
|||||||
Sbjct: 1 aggggtt 7
>mmu-miR-7020-3p MIMAT0027945 Mus musculus miR-7020-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggggtt 7
|||||||
Sbjct: 7 aggggtt 1
>cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
>aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
>hsa-miR-5195-5p MIMAT0021126 Homo sapiens miR-5195-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggggtt 7
|||||||
Sbjct: 7 aggggtt 1
>bdi-miR395d-5p MIMAT0027082 Brachypodium distachyon miR395d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 2 ggggttc 8
>pma-miR-23a-5p MIMAT0019402 Petromyzon marinus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 2 ggggttc 8
>tca-miR-3892-5p MIMAT0018884 Tribolium castaneum miR-3892-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggggtt 7
|||||||
Sbjct: 7 aggggtt 1
>tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtt 7
|||||||
Sbjct: 1 aggggtt 7
>bta-miR-409b MIMAT0016935 Bos taurus miR-409b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
>ppy-miR-615-5p MIMAT0016056 Pongo pygmaeus miR-615-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 2 ggggttc 8
>osa-miR2872 MIMAT0013822 Oryza sativa miR2872
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 2 ggggttc 8
>bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggggtt 7
|||||||
Sbjct: 1 aggggtt 7
>oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
>rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
>mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
>hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggttc 8
|||||||
Sbjct: 1 ggggttc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 134
Number of extensions: 114
Number of successful extensions: 80
Number of sequences better than 100.0: 19
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
