BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-3-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cin-miR-4008a-3p MIMAT0016496 Ciona intestinalis miR-4008a-3p 14 20
cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p 14 20
mml-miR-616 MIMAT0006467 Macaca mulatta miR-616 14 20
gga-miR-1605 MIMAT0007471 Gallus gallus miR-1605 14 20
ppt-miR1054 MIMAT0005172 Physcomitrella patens miR1054 14 20
chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p 12 80
chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p 12 80
rno-miR-193b-5p MIMAT0035733 Rattus norvegicus miR-193b-5p 12 80
gsa-miR-10b-5p MIMAT0035308 Gyrodactylus salaris miR-10b-5p 12 80
efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b 12 80
efu-miR-99a MIMAT0034944 Eptesicus fuscus miR-99a 12 80
atr-miR8584 MIMAT0033869 Amborella trichopoda miR8584 12 80
pxy-miR-8524-5p MIMAT0033765 Plutella xylostella miR-8524-5p 12 80
pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497 12 80
pxy-miR-8507-5p MIMAT0033724 Plutella xylostella miR-8507-5p 12 80
sma-miR-8478-5p MIMAT0033677 Schistosoma mansoni miR-8478-5p 12 80
ppc-miR-8233-5p MIMAT0032918 Pristionchus pacificus miR-8233-5p 12 80
ssa-miR-430c-5p MIMAT0032635 Salmo salar miR-430c-5p 12 80
ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p 12 80
ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p 12 80
bbe-miR-10b-5p MIMAT0031574 Branchiostoma belcheri miR-10b-5p 12 80
stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b 12 80
prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p 12 80
lva-miR-10-5p MIMAT0032193 Lytechinus variegatus miR-10-5p 12 80
pmi-miR-10-5p MIMAT0032143 Patiria miniata miR-10-5p 12 80
gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p 12 80
mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p 12 80
mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p 12 80
mmu-miR-7031-3p MIMAT0027967 Mus musculus miR-7031-3p 12 80
mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p 12 80
mmu-miR-7017-5p MIMAT0027938 Mus musculus miR-7017-5p 12 80
hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p 12 80
hsa-miR-6823-5p MIMAT0027546 Homo sapiens miR-6823-5p 12 80
bta-miR-2285n MIMAT0025531 Bos taurus miR-2285n 12 80
bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o 12 80
sma-miR-10-5p MIMAT0025023 Schistosoma mansoni miR-10-5p 12 80
mse-miR-2788 MIMAT0024492 Manduca sexta miR-2788 12 80
ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296 12 80
ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b 12 80
cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p 12 80
hco-miR-5904b MIMAT0023373 Haemonchus contortus miR-5904b 12 80
hco-miR-5907 MIMAT0023361 Haemonchus contortus miR-5907 12 80
mtr-miR5037c MIMAT0023153 Medicago truncatula miR5037c 12 80
mtr-miR5037b MIMAT0023151 Medicago truncatula miR5037b 12 80
mtr-miR5037a MIMAT0023150 Medicago truncatula miR5037a 12 80
hsa-miR-548as-3p MIMAT0022268 Homo sapiens miR-548as-3p 12 80
gma-miR5037b MIMAT0021605 Glycine max miR5037b 12 80
asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p 12 80
hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087 12 80
hme-miR-2788-5p MIMAT0020536 Heliconius melpomene miR-2788-5p 12 80
cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927 12 80
pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596 12 80
tca-miR-3885-3p MIMAT0018869 Tribolium castaneum miR-3885-3p 12 80
tca-miR-2788-5p MIMAT0018798 Tribolium castaneum miR-2788-5p 12 80
tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p 12 80
ssc-miR-652 MIMAT0017964 Sus scrofa miR-652 12 80
ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p 12 80
sja-miR-10-5p MIMAT0016253 Schistosoma japonicum miR-10-5p 12 80
api-miR-3038 MIMAT0014775 Acyrthosiphon pisum miR-3038 12 80
tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p 12 80
bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p 12 80
bmo-miR-2788 MIMAT0013685 Bombyx mori miR-2788 12 80
bta-miR-2472 MIMAT0012063 Bos taurus miR-2472 12 80
sme-miR-10a-5p MIMAT0011223 Schmidtea mediterranea miR-10a-5p 12 80
spu-miR-10 MIMAT0009654 Strongylocentrotus purpuratus miR-10 12 80
bfl-miR-10b MIMAT0009468 Branchiostoma floridae miR-10b 12 80
dvi-miR-219-3p MIMAT0032098 Drosophila virilis miR-219-3p 12 80
cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b 12 80
mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p 12 80
oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p 12 80
rno-miR-652-5p MIMAT0017321 Rattus norvegicus miR-652-5p 12 80
ppt-miR1074 MIMAT0005204 Physcomitrella patens miR1074 12 80
mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p 12 80
cel-miR-799 MIMAT0004234 Caenorhabditis elegans miR-799 12 80
sme-miR-10b-5p MIMAT0003973 Schmidtea mediterranea miR-10b-5p 12 80
gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p 12 80
hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p 12 80
ath-miR398c-5p MIMAT0031912 Arabidopsis thaliana miR398c-5p 12 80
ath-miR398b-5p MIMAT0031911 Arabidopsis thaliana miR398b-5p 12 80
dme-miR-219-3p MIMAT0020803 Drosophila melanogaster miR-219-3p 12 80
>cin-miR-4008a-3p MIMAT0016496 Ciona intestinalis miR-4008a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agggttt 7
|||||||
Sbjct: 1 agggttt 7
>cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agggttt 7
|||||||
Sbjct: 1 agggttt 7
>mml-miR-616 MIMAT0006467 Macaca mulatta miR-616
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agggttt 7
|||||||
Sbjct: 7 agggttt 1
>gga-miR-1605 MIMAT0007471 Gallus gallus miR-1605
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agggttt 7
|||||||
Sbjct: 1 agggttt 7
>ppt-miR1054 MIMAT0005172 Physcomitrella patens miR1054
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agggttt 7
|||||||
Sbjct: 8 agggttt 2
>chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>rno-miR-193b-5p MIMAT0035733 Rattus norvegicus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 2 gggttt 7
>gsa-miR-10b-5p MIMAT0035308 Gyrodactylus salaris miR-10b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>efu-miR-99a MIMAT0034944 Eptesicus fuscus miR-99a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggttt 7
||||||
Sbjct: 6 gggttt 1
>atr-miR8584 MIMAT0033869 Amborella trichopoda miR8584
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 8 agggtt 3
>pxy-miR-8524-5p MIMAT0033765 Plutella xylostella miR-8524-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 1 gggttt 6
>pxy-miR-8507-5p MIMAT0033724 Plutella xylostella miR-8507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>sma-miR-8478-5p MIMAT0033677 Schistosoma mansoni miR-8478-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 3 agggtt 8
>ppc-miR-8233-5p MIMAT0032918 Pristionchus pacificus miR-8233-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>ssa-miR-430c-5p MIMAT0032635 Salmo salar miR-430c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>ssa-miR-192b-3p MIMAT0032444 Salmo salar miR-192b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 1 gggttt 6
>bbe-miR-10b-5p MIMAT0031574 Branchiostoma belcheri miR-10b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggttt 7
||||||
Sbjct: 6 gggttt 1
>prd-miR-124-5p MIMAT0030786 Panagrellus redivivus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 1 gggttt 6
>lva-miR-10-5p MIMAT0032193 Lytechinus variegatus miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>pmi-miR-10-5p MIMAT0032143 Patiria miniata miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>mml-miR-7172-3p MIMAT0028283 Macaca mulatta miR-7172-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggttt 7
||||||
Sbjct: 8 gggttt 3
>mmu-miR-7031-3p MIMAT0027967 Mus musculus miR-7031-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>mmu-miR-7017-5p MIMAT0027938 Mus musculus miR-7017-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 3 agggtt 8
>hsa-miR-6839-3p MIMAT0027581 Homo sapiens miR-6839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>hsa-miR-6823-5p MIMAT0027546 Homo sapiens miR-6823-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 3 agggtt 8
>bta-miR-2285n MIMAT0025531 Bos taurus miR-2285n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggttt 7
||||||
Sbjct: 8 gggttt 3
>bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggttt 7
||||||
Sbjct: 6 gggttt 1
>sma-miR-10-5p MIMAT0025023 Schistosoma mansoni miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>mse-miR-2788 MIMAT0024492 Manduca sexta miR-2788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>hco-miR-5904b MIMAT0023373 Haemonchus contortus miR-5904b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggttt 7
||||||
Sbjct: 8 gggttt 3
>hco-miR-5907 MIMAT0023361 Haemonchus contortus miR-5907
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 8 agggtt 3
>mtr-miR5037c MIMAT0023153 Medicago truncatula miR5037c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>mtr-miR5037b MIMAT0023151 Medicago truncatula miR5037b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>mtr-miR5037a MIMAT0023150 Medicago truncatula miR5037a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>hsa-miR-548as-3p MIMAT0022268 Homo sapiens miR-548as-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggttt 7
||||||
Sbjct: 8 gggttt 3
>gma-miR5037b MIMAT0021605 Glycine max miR5037b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 1 gggttt 6
>hme-miR-2788-5p MIMAT0020536 Heliconius melpomene miR-2788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 1 gggttt 6
>tca-miR-3885-3p MIMAT0018869 Tribolium castaneum miR-3885-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 1 gggttt 6
>tca-miR-2788-5p MIMAT0018798 Tribolium castaneum miR-2788-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>tca-miR-2796-5p MIMAT0018712 Tribolium castaneum miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>ssc-miR-652 MIMAT0017964 Sus scrofa miR-652
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 8 agggtt 3
>ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>sja-miR-10-5p MIMAT0016253 Schistosoma japonicum miR-10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>api-miR-3038 MIMAT0014775 Acyrthosiphon pisum miR-3038
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>bmo-miR-2796-5p MIMAT0013696 Bombyx mori miR-2796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>bmo-miR-2788 MIMAT0013685 Bombyx mori miR-2788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>bta-miR-2472 MIMAT0012063 Bos taurus miR-2472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 3 agggtt 8
>sme-miR-10a-5p MIMAT0011223 Schmidtea mediterranea miR-10a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>spu-miR-10 MIMAT0009654 Strongylocentrotus purpuratus miR-10
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>bfl-miR-10b MIMAT0009468 Branchiostoma floridae miR-10b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>dvi-miR-219-3p MIMAT0032098 Drosophila virilis miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>rno-miR-652-5p MIMAT0017321 Rattus norvegicus miR-652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 8 agggtt 3
>ppt-miR1074 MIMAT0005204 Physcomitrella patens miR1074
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>cel-miR-799 MIMAT0004234 Caenorhabditis elegans miR-799
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 8 agggtt 3
>sme-miR-10b-5p MIMAT0003973 Schmidtea mediterranea miR-10b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agggtt 6
||||||
Sbjct: 6 agggtt 1
>gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggttt 7
||||||
Sbjct: 3 gggttt 8
>ath-miR398c-5p MIMAT0031912 Arabidopsis thaliana miR398c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>ath-miR398b-5p MIMAT0031911 Arabidopsis thaliana miR398b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
>dme-miR-219-3p MIMAT0020803 Drosophila melanogaster miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agggtt 6
||||||
Sbjct: 1 agggtt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 116
Number of extensions: 111
Number of successful extensions: 80
Number of sequences better than 100.0: 80
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 80
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
