BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-3-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497 14 27
str-miR-8386-5p MIMAT0033432 Strongyloides ratti miR-8386-5p 14 27
hsa-miR-6771-3p MIMAT0027443 Homo sapiens miR-6771-3p 14 27
hco-miR-5904c MIMAT0023418 Haemonchus contortus miR-5904c 14 27
hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087 14 27
pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596 14 27
cin-miR-4008a-3p MIMAT0016496 Ciona intestinalis miR-4008a-3p 14 27
cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p 14 27
cte-miR-2696 MIMAT0013557 Capitella teleta miR-2696 14 27
mml-miR-616 MIMAT0006467 Macaca mulatta miR-616 14 27
gga-miR-1605 MIMAT0007471 Gallus gallus miR-1605 14 27
ppt-miR1054 MIMAT0005172 Physcomitrella patens miR1054 14 27
>pxy-miR-6497 MIMAT0033761 Plutella xylostella miR-6497
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gggtttg 8
|||||||
Sbjct: 1 gggtttg 7
>str-miR-8386-5p MIMAT0033432 Strongyloides ratti miR-8386-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gggtttg 8
|||||||
Sbjct: 2 gggtttg 8
>hsa-miR-6771-3p MIMAT0027443 Homo sapiens miR-6771-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggtttg 8
|||||||
Sbjct: 7 gggtttg 1
>hco-miR-5904c MIMAT0023418 Haemonchus contortus miR-5904c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggtttg 8
|||||||
Sbjct: 7 gggtttg 1
>hsa-miR-5087 MIMAT0021079 Homo sapiens miR-5087
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gggtttg 8
|||||||
Sbjct: 1 gggtttg 7
>pma-miR-4596 MIMAT0019629 Petromyzon marinus miR-4596
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gggtttg 8
|||||||
Sbjct: 1 gggtttg 7
>cin-miR-4008a-3p MIMAT0016496 Ciona intestinalis miR-4008a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agggttt 7
|||||||
Sbjct: 1 agggttt 7
>cin-miR-1502c-3p MIMAT0016492 Ciona intestinalis miR-1502c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agggttt 7
|||||||
Sbjct: 1 agggttt 7
>cte-miR-2696 MIMAT0013557 Capitella teleta miR-2696
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gggtttg 8
|||||||
Sbjct: 2 gggtttg 8
>mml-miR-616 MIMAT0006467 Macaca mulatta miR-616
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agggttt 7
|||||||
Sbjct: 7 agggttt 1
>gga-miR-1605 MIMAT0007471 Gallus gallus miR-1605
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agggttt 7
|||||||
Sbjct: 1 agggttt 7
>ppt-miR1054 MIMAT0005172 Physcomitrella patens miR1054
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agggttt 7
|||||||
Sbjct: 8 agggttt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 159
Number of extensions: 147
Number of successful extensions: 108
Number of sequences better than 100.0: 12
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
