BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-125b-2-3p MIMAT0032309 Salmo salar miR-125b-2-3p 14 20
mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p 14 20
aly-miR156b-3p MIMAT0017400 Arabidopsis lyrata miR156b-3p 14 20
mmu-miR-1983 MIMAT0009455 Mus musculus miR-1983 14 20
mml-miR-1241 MIMAT0005862 Macaca mulatta miR-1241 14 20
zma-miR171g-3p MIMAT0001741 Zea mays miR171g-3p 14 20
mghv-miR-M1-3-3p MIMAT0001566 Mouse gammaherpesvirus miR-M1-3-3p 14 20
sbi-miR171c MIMAT0001463 Sorghum bicolor miR171c 14 20
osa-miR171g MIMAT0001068 Oryza sativa miR171g 14 20
ssc-miR-9838-5p MIMAT0037056 Sus scrofa miR-9838-5p 12 80
ssc-miR-9827-5p MIMAT0037045 Sus scrofa miR-9827-5p 12 80
oha-miR-125a-3p MIMAT0036673 Ophiophagus hannah miR-125a-3p 12 80
chi-miR-125a-3p MIMAT0035924 Capra hircus miR-125a-3p 12 80
bra-miR156e-3p MIMAT0035825 Brassica rapa miR156e-3p 12 80
dvi-miR-9543a-5p MIMAT0035626 Drosophila virilis miR-9543a-5p 12 80
dvi-miR-1010-3p MIMAT0035557 Drosophila virilis miR-1010-3p 12 80
gra-miR8675c MIMAT0034085 Gossypium raimondii miR8675c 12 80
gra-miR8675b MIMAT0034084 Gossypium raimondii miR8675b 12 80
ssa-miR-125b-3-3p MIMAT0032310 Salmo salar miR-125b-3-3p 12 80
ssa-miR-125b-1-3p MIMAT0032308 Salmo salar miR-125b-1-3p 12 80
bbe-miR-4856a-3p MIMAT0031734 Branchiostoma belcheri miR-4856a-3p 12 80
bbe-miR-4868c-3p MIMAT0031694 Branchiostoma belcheri miR-4868c-3p 12 80
prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus miR-7950b-5p 12 80
prd-miR-7916-5p MIMAT0030666 Panagrellus redivivus miR-7916-5p 12 80
hsa-miR-7855-5p MIMAT0030430 Homo sapiens miR-7855-5p 12 80
hsa-miR-7854-3p MIMAT0030429 Homo sapiens miR-7854-3p 12 80
cbn-miR-7624 MIMAT0029666 Caenorhabditis brenneri miR-7624 12 80
mdo-miR-7329-5p MIMAT0028660 Monodelphis domestica miR-7329-5p 12 80
mdo-miR-7244-3p MIMAT0028455 Monodelphis domestica miR-7244-3p 12 80
mmu-miR-7220-5p MIMAT0028408 Mus musculus miR-7220-5p 12 80
mmu-miR-7019-3p MIMAT0027943 Mus musculus miR-7019-3p 12 80
hsa-miR-6800-5p MIMAT0027500 Homo sapiens miR-6800-5p 12 80
hsa-miR-6784-3p MIMAT0027469 Homo sapiens miR-6784-3p 12 80
hsa-miR-6765-3p MIMAT0027431 Homo sapiens miR-6765-3p 12 80
prv-miR-LLT1 MIMAT0025304 Pseudorabies virus miR-LLT1 12 80
hvu-miR6189 MIMAT0024814 Hordeum vulgare miR6189 12 80
cgr-miR-125a-3p MIMAT0023742 Cricetulus griseus miR-125a-3p 12 80
gma-miR4416b MIMAT0023177 Glycine max miR4416b 12 80
ola-miR-125a-3p MIMAT0022639 Oryzias latipes miR-125a-3p 12 80
ath-miR5662 MIMAT0022439 Arabidopsis thaliana miR5662 12 80
aca-miR-125a-3p MIMAT0021728 Anolis carolinensis miR-125a-3p 12 80
bfl-miR-4868c-5p MIMAT0020106 Branchiostoma floridae miR-4868c-5p 12 80
pma-miR-4602 MIMAT0019636 Petromyzon marinus miR-4602 12 80
oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p 12 80
hsa-miR-3622b-3p MIMAT0018006 Homo sapiens miR-3622b-3p 12 80
hsa-miR-3622a-3p MIMAT0018004 Homo sapiens miR-3622a-3p 12 80
hsa-miR-4316 MIMAT0016867 Homo sapiens miR-4316 12 80
ahy-miR3520-5p MIMAT0016346 Arachis hypogaea miR3520-5p 12 80
ppy-miR-125a-3p MIMAT0015749 Pongo pygmaeus miR-125a-3p 12 80
bmo-miR-3231 MIMAT0015413 Bombyx mori miR-3231 12 80
eca-miR-125a-3p MIMAT0013009 Equus caballus miR-125a-3p 12 80
dsi-miR-1010-3p MIMAT0012464 Drosophila simulans miR-1010-3p 12 80
dps-miR-1010-3p MIMAT0012274 Drosophila pseudoobscura miR-1010-3p 12 80
mmu-miR-1982-3p MIMAT0009460 Mus musculus miR-1982-3p 12 80
ptr-miR-125a MIMAT0007984 Pan troglodytes miR-125a 12 80
aga-miR-87 MIMAT0007858 Anopheles gambiae miR-87 12 80
mml-miR-125a-3p MIMAT0006182 Macaca mulatta miR-125a-3p 12 80
gga-miR-1790 MIMAT0007703 Gallus gallus miR-1790 12 80
gga-miR-1554 MIMAT0007411 Gallus gallus miR-1554 12 80
odi-miR-1471 MIMAT0006022 Oikopleura dioica miR-1471 12 80
oan-miR-1412 MIMAT0007232 Ornithorhynchus anatinus miR-1412 12 80
oan-miR-1393 MIMAT0007191 Ornithorhynchus anatinus miR-1393 12 80
oan-miR-181c-3p MIMAT0007059 Ornithorhynchus anatinus miR-181c-3p 12 80
oan-miR-1369 MIMAT0007034 Ornithorhynchus anatinus miR-1369 12 80
hsa-miR-1229-3p MIMAT0005584 Homo sapiens miR-1229-3p 12 80
ppt-miR1032 MIMAT0005135 Physcomitrella patens miR1032 12 80
dme-miR-1010-3p MIMAT0005023 Drosophila melanogaster miR-1010-3p 12 80
rlcv-miR-rL1-8-5p MIMAT0003437 Rhesus lymphocryptovirus miR-rL1-... 12 80
ebv-miR-BART5-5p MIMAT0003413 Epstein Barr miR-BART5-5p 12 80
rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p 12 80
rno-miR-125a-3p MIMAT0004729 Rattus norvegicus miR-125a-3p 12 80
hsa-miR-125a-3p MIMAT0004602 Homo sapiens miR-125a-3p 12 80
ath-miR156b-3p MIMAT0031866 Arabidopsis thaliana miR156b-3p 12 80
mmu-miR-125a-3p MIMAT0004528 Mus musculus miR-125a-3p 12 80
>ssa-miR-125b-2-3p MIMAT0032309 Salmo salar miR-125b-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggtgag 7
|||||||
Sbjct: 2 aggtgag 8
>mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggtgag 7
|||||||
Sbjct: 8 aggtgag 2
>aly-miR156b-3p MIMAT0017400 Arabidopsis lyrata miR156b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggtgag 7
|||||||
Sbjct: 8 aggtgag 2
>mmu-miR-1983 MIMAT0009455 Mus musculus miR-1983
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggtgag 7
|||||||
Sbjct: 7 aggtgag 1
>mml-miR-1241 MIMAT0005862 Macaca mulatta miR-1241
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aggtgag 7
|||||||
Sbjct: 7 aggtgag 1
>zma-miR171g-3p MIMAT0001741 Zea mays miR171g-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggtgag 7
|||||||
Sbjct: 2 aggtgag 8
>mghv-miR-M1-3-3p MIMAT0001566 Mouse gammaherpesvirus
miR-M1-3-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggtgag 7
|||||||
Sbjct: 2 aggtgag 8
>sbi-miR171c MIMAT0001463 Sorghum bicolor miR171c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggtgag 7
|||||||
Sbjct: 2 aggtgag 8
>osa-miR171g MIMAT0001068 Oryza sativa miR171g
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggtgag 7
|||||||
Sbjct: 2 aggtgag 8
>ssc-miR-9838-5p MIMAT0037056 Sus scrofa miR-9838-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>ssc-miR-9827-5p MIMAT0037045 Sus scrofa miR-9827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 1 ggtgag 6
>oha-miR-125a-3p MIMAT0036673 Ophiophagus hannah miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>chi-miR-125a-3p MIMAT0035924 Capra hircus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>bra-miR156e-3p MIMAT0035825 Brassica rapa miR156e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgag 7
||||||
Sbjct: 8 ggtgag 3
>dvi-miR-9543a-5p MIMAT0035626 Drosophila virilis miR-9543a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>dvi-miR-1010-3p MIMAT0035557 Drosophila virilis miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 8 aggtga 3
>gra-miR8675c MIMAT0034085 Gossypium raimondii miR8675c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 1 aggtga 6
>gra-miR8675b MIMAT0034084 Gossypium raimondii miR8675b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 1 aggtga 6
>ssa-miR-125b-3-3p MIMAT0032310 Salmo salar miR-125b-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>ssa-miR-125b-1-3p MIMAT0032308 Salmo salar miR-125b-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>bbe-miR-4856a-3p MIMAT0031734 Branchiostoma belcheri
miR-4856a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 1 aggtga 6
>bbe-miR-4868c-3p MIMAT0031694 Branchiostoma belcheri
miR-4868c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 3 ggtgag 8
>prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus
miR-7950b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 8 aggtga 3
>prd-miR-7916-5p MIMAT0030666 Panagrellus redivivus miR-7916-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 1 ggtgag 6
>hsa-miR-7855-5p MIMAT0030430 Homo sapiens miR-7855-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 3 ggtgag 8
>hsa-miR-7854-3p MIMAT0030429 Homo sapiens miR-7854-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>cbn-miR-7624 MIMAT0029666 Caenorhabditis brenneri miR-7624
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>mdo-miR-7329-5p MIMAT0028660 Monodelphis domestica miR-7329-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 1 ggtgag 6
>mdo-miR-7244-3p MIMAT0028455 Monodelphis domestica miR-7244-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>mmu-miR-7220-5p MIMAT0028408 Mus musculus miR-7220-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 1 ggtgag 6
>mmu-miR-7019-3p MIMAT0027943 Mus musculus miR-7019-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>hsa-miR-6800-5p MIMAT0027500 Homo sapiens miR-6800-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>hsa-miR-6784-3p MIMAT0027469 Homo sapiens miR-6784-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgag 7
||||||
Sbjct: 7 ggtgag 2
>hsa-miR-6765-3p MIMAT0027431 Homo sapiens miR-6765-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>prv-miR-LLT1 MIMAT0025304 Pseudorabies virus miR-LLT1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgag 7
||||||
Sbjct: 7 ggtgag 2
>hvu-miR6189 MIMAT0024814 Hordeum vulgare miR6189
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 1 aggtga 6
>cgr-miR-125a-3p MIMAT0023742 Cricetulus griseus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>gma-miR4416b MIMAT0023177 Glycine max miR4416b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 3 ggtgag 8
>ola-miR-125a-3p MIMAT0022639 Oryzias latipes miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>ath-miR5662 MIMAT0022439 Arabidopsis thaliana miR5662
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>aca-miR-125a-3p MIMAT0021728 Anolis carolinensis miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>bfl-miR-4868c-5p MIMAT0020106 Branchiostoma floridae
miR-4868c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 3 ggtgag 8
>pma-miR-4602 MIMAT0019636 Petromyzon marinus miR-4602
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 8 aggtga 3
>hsa-miR-3622b-3p MIMAT0018006 Homo sapiens miR-3622b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>hsa-miR-3622a-3p MIMAT0018004 Homo sapiens miR-3622a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>hsa-miR-4316 MIMAT0016867 Homo sapiens miR-4316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 1 ggtgag 6
>ahy-miR3520-5p MIMAT0016346 Arachis hypogaea miR3520-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 1 aggtga 6
>ppy-miR-125a-3p MIMAT0015749 Pongo pygmaeus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>bmo-miR-3231 MIMAT0015413 Bombyx mori miR-3231
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>eca-miR-125a-3p MIMAT0013009 Equus caballus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>dsi-miR-1010-3p MIMAT0012464 Drosophila simulans miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 8 aggtga 3
>dps-miR-1010-3p MIMAT0012274 Drosophila pseudoobscura
miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 8 aggtga 3
>mmu-miR-1982-3p MIMAT0009460 Mus musculus miR-1982-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgag 7
||||||
Sbjct: 7 ggtgag 2
>ptr-miR-125a MIMAT0007984 Pan troglodytes miR-125a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>aga-miR-87 MIMAT0007858 Anopheles gambiae miR-87
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 1 ggtgag 6
>mml-miR-125a-3p MIMAT0006182 Macaca mulatta miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>gga-miR-1790 MIMAT0007703 Gallus gallus miR-1790
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 3 ggtgag 8
>gga-miR-1554 MIMAT0007411 Gallus gallus miR-1554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>odi-miR-1471 MIMAT0006022 Oikopleura dioica miR-1471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>oan-miR-1412 MIMAT0007232 Ornithorhynchus anatinus miR-1412
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 3 ggtgag 8
>oan-miR-1393 MIMAT0007191 Ornithorhynchus anatinus miR-1393
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 6 aggtga 1
>oan-miR-181c-3p MIMAT0007059 Ornithorhynchus anatinus
miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgag 7
||||||
Sbjct: 6 ggtgag 1
>oan-miR-1369 MIMAT0007034 Ornithorhynchus anatinus miR-1369
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggtgag 7
||||||
Sbjct: 3 ggtgag 8
>hsa-miR-1229-3p MIMAT0005584 Homo sapiens miR-1229-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgag 7
||||||
Sbjct: 8 ggtgag 3
>ppt-miR1032 MIMAT0005135 Physcomitrella patens miR1032
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 1 aggtga 6
>dme-miR-1010-3p MIMAT0005023 Drosophila melanogaster
miR-1010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 8 aggtga 3
>rlcv-miR-rL1-8-5p MIMAT0003437 Rhesus lymphocryptovirus
miR-rL1-8-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>ebv-miR-BART5-5p MIMAT0003413 Epstein Barr miR-BART5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggtga 6
||||||
Sbjct: 8 aggtga 3
>rno-miR-125a-3p MIMAT0004729 Rattus norvegicus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>hsa-miR-125a-3p MIMAT0004602 Homo sapiens miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
>ath-miR156b-3p MIMAT0031866 Arabidopsis thaliana miR156b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgag 7
||||||
Sbjct: 8 ggtgag 3
>mmu-miR-125a-3p MIMAT0004528 Mus musculus miR-125a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggtga 6
||||||
Sbjct: 3 aggtga 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 106
Number of extensions: 97
Number of successful extensions: 74
Number of sequences better than 100.0: 74
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 74
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)