BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ttv-twh-t1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-2756 MIMAT0033749 Plutella xylostella miR-2756 14 27
mdo-miR-7373b-3p MIMAT0028803 Monodelphis domestica miR-7373b-3p 14 27
hsa-miR-5690 MIMAT0022482 Homo sapiens miR-5690 14 27
bmo-miR-3296-3p MIMAT0015484 Bombyx mori miR-3296-3p 14 27
>pxy-miR-2756 MIMAT0033749 Plutella xylostella miR-2756
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtagctg 8
|||||||
Sbjct: 2 gtagctg 8
>mdo-miR-7373b-3p MIMAT0028803 Monodelphis domestica
miR-7373b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtagctg 8
|||||||
Sbjct: 8 gtagctg 2
>hsa-miR-5690 MIMAT0022482 Homo sapiens miR-5690
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtagctg 8
|||||||
Sbjct: 8 gtagctg 2
>bmo-miR-3296-3p MIMAT0015484 Bombyx mori miR-3296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtagct 7
|||||||
Sbjct: 8 agtagct 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 154
Number of extensions: 150
Number of successful extensions: 141
Number of sequences better than 100.0: 4
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 4
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)