BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-18
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8703c MIMAT0034090 Gossypium raimondii miR8703c 14 20
gra-miR8703b MIMAT0034089 Gossypium raimondii miR8703b 14 20
gra-miR8703a MIMAT0034088 Gossypium raimondii miR8703a 14 20
mmu-miR-6921-3p MIMAT0027743 Mus musculus miR-6921-3p 14 20
rgl-miR5573 MIMAT0022998 Rehmannia glutinosa miR5573 14 20
pma-miR-199b-3p MIMAT0019508 Petromyzon marinus miR-199b-3p 14 20
pma-miR-199a-3p MIMAT0019506 Petromyzon marinus miR-199a-3p 14 20
gga-miR-199b MIMAT0007583 Gallus gallus miR-199b 14 20
oha-miR-199b-3p MIMAT0036792 Ophiophagus hannah miR-199b-3p 12 80
oha-miR-199a-3p MIMAT0036790 Ophiophagus hannah miR-199a-3p 12 80
tch-miR-199a-3p MIMAT0036529 Tupaia chinensis miR-199a-3p 12 80
tch-miR-199b-3p MIMAT0036479 Tupaia chinensis miR-199b-3p 12 80
chi-miR-199c-3p MIMAT0036041 Capra hircus miR-199c-3p 12 80
chi-miR-199b-3p MIMAT0036039 Capra hircus miR-199b-3p 12 80
chi-miR-199a-3p MIMAT0036037 Capra hircus miR-199a-3p 12 80
bra-miR860-5p MIMAT0035860 Brassica rapa miR860-5p 12 80
dvi-miR-968-5p MIMAT0035586 Drosophila virilis miR-968-5p 12 80
eca-miR-9093 MIMAT0034638 Equus caballus miR-9093 12 80
ppc-miR-8329-3p MIMAT0033203 Pristionchus pacificus miR-8329-3p 12 80
ssa-miR-199a-3p MIMAT0032461 Salmo salar miR-199a-3p 12 80
oar-miR-199a-3p MIMAT0030040 Ovis aries miR-199a-3p 12 80
ipu-miR-199a-3p MIMAT0031093 Ictalurus punctatus miR-199a-3p 12 80
ccr-miR-199-3p MIMAT0026256 Cyprinus carpio miR-199-3p 12 80
mmu-miR-7076-3p MIMAT0028059 Mus musculus miR-7076-3p 12 80
pol-miR-199a-3p MIMAT0025441 Paralichthys olivaceus miR-199a-3p 12 80
ggo-miR-3129 MIMAT0024265 Gorilla gorilla miR-3129 12 80
ptr-miR-3129 MIMAT0024041 Pan troglodytes miR-3129 12 80
cgr-miR-199a-3p MIMAT0023837 Cricetulus griseus miR-199a-3p 12 80
hco-miR-5989 MIMAT0023505 Haemonchus contortus miR-5989 12 80
sha-miR-199a MIMAT0022785 Sarcophilus harrisii miR-199a 12 80
ola-miR-199a-3p MIMAT0022539 Oryzias latipes miR-199a-3p 12 80
bfl-miR-4877 MIMAT0020460 Branchiostoma floridae miR-4877 12 80
ppy-miR-606 MIMAT0016048 Pongo pygmaeus miR-606 12 80
ppy-miR-199a-3p MIMAT0015793 Pongo pygmaeus miR-199a-3p 12 80
hsa-miR-3129-5p MIMAT0014992 Homo sapiens miR-3129-5p 12 80
api-miR-3025 MIMAT0014761 Acyrthosiphon pisum miR-3025 12 80
tgu-miR-199-3p MIMAT0014617 Taeniopygia guttata miR-199-3p 12 80
ssc-miR-199a-3p MIMAT0013875 Sus scrofa miR-199a-3p 12 80
eca-miR-199b-3p MIMAT0013781 Equus caballus miR-199b-3p 12 80
eca-miR-199a-3p MIMAT0012961 Equus caballus miR-199a-3p 12 80
ptr-miR-606 MIMAT0012810 Pan troglodytes miR-606 12 80
dsi-miR-968-5p MIMAT0012441 Drosophila simulans miR-968-5p 12 80
dps-miR-968-5p MIMAT0012245 Drosophila pseudoobscura miR-968-5p 12 80
crm-miR-64a-3p MIMAT0011634 Caenorhabditis remanei miR-64a-3p 12 80
ptr-miR-199b MIMAT0008062 Pan troglodytes miR-199b 12 80
ptr-miR-199a-3p MIMAT0009192 Pan troglodytes miR-199a-3p 12 80
cfa-miR-1844 MIMAT0006740 Canis familiaris miR-1844 12 80
cfa-miR-199 MIMAT0006642 Canis familiaris miR-199 12 80
mml-miR-199a-3p MIMAT0006232 Macaca mulatta miR-199a-3p 12 80
cin-miR-199-3p MIMAT0006109 Ciona intestinalis miR-199-3p 12 80
oan-miR-199-3p MIMAT0007173 Ornithorhynchus anatinus miR-199-3p 12 80
oan-miR-222b-5p MIMAT0007056 Ornithorhynchus anatinus miR-222b-5p 12 80
tae-miR1121 MIMAT0005356 Triticum aestivum miR1121 12 80
ppt-miR1061-3p MIMAT0005180 Physcomitrella patens miR1061-3p 12 80
dme-miR-968-5p MIMAT0005484 Drosophila melanogaster miR-968-5p 12 80
mdo-miR-199b-3p MIMAT0026678 Monodelphis domestica miR-199b-3p 12 80
bta-miR-199a-3p MIMAT0003746 Bos taurus miR-199a-3p 12 80
hsa-miR-606 MIMAT0003274 Homo sapiens miR-606 12 80
kshv-miR-K12-5-5p MIMAT0015218 Kaposi sarcoma-associated miR-K12... 12 80
ptc-miR480 MIMAT0002096 Populus trichocarpa miR480 12 80
dre-miR-199-3-3p MIMAT0031922 Danio rerio miR-199-3-3p 12 80
rno-miR-199a-3p MIMAT0004738 Rattus norvegicus miR-199a-3p 12 80
mmu-miR-199b-3p MIMAT0004667 Mus musculus miR-199b-3p 12 80
rno-miR-352 MIMAT0000610 Rattus norvegicus miR-352 12 80
cbr-miR-252 MIMAT0000507 Caenorhabditis briggsae miR-252 12 80
hsa-miR-199b-3p MIMAT0004563 Homo sapiens miR-199b-3p 12 80
hsa-miR-199a-3p MIMAT0000232 Homo sapiens miR-199a-3p 12 80
mmu-miR-199a-3p MIMAT0000230 Mus musculus miR-199a-3p 12 80
>gra-miR8703c MIMAT0034090 Gossypium raimondii miR8703c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtc 7
|||||||
Sbjct: 1 agtagtc 7
>gra-miR8703b MIMAT0034089 Gossypium raimondii miR8703b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtc 7
|||||||
Sbjct: 1 agtagtc 7
>gra-miR8703a MIMAT0034088 Gossypium raimondii miR8703a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtc 7
|||||||
Sbjct: 1 agtagtc 7
>mmu-miR-6921-3p MIMAT0027743 Mus musculus miR-6921-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtagtc 7
|||||||
Sbjct: 8 agtagtc 2
>rgl-miR5573 MIMAT0022998 Rehmannia glutinosa miR5573
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtc 7
|||||||
Sbjct: 2 agtagtc 8
>pma-miR-199b-3p MIMAT0019508 Petromyzon marinus miR-199b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtc 7
|||||||
Sbjct: 2 agtagtc 8
>pma-miR-199a-3p MIMAT0019506 Petromyzon marinus miR-199a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtc 7
|||||||
Sbjct: 2 agtagtc 8
>gga-miR-199b MIMAT0007583 Gallus gallus miR-199b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtc 7
|||||||
Sbjct: 2 agtagtc 8
>oha-miR-199b-3p MIMAT0036792 Ophiophagus hannah miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>oha-miR-199a-3p MIMAT0036790 Ophiophagus hannah miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>tch-miR-199a-3p MIMAT0036529 Tupaia chinensis miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>tch-miR-199b-3p MIMAT0036479 Tupaia chinensis miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>chi-miR-199c-3p MIMAT0036041 Capra hircus miR-199c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>chi-miR-199b-3p MIMAT0036039 Capra hircus miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>chi-miR-199a-3p MIMAT0036037 Capra hircus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>bra-miR860-5p MIMAT0035860 Brassica rapa miR860-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtagtc 7
||||||
Sbjct: 3 gtagtc 8
>dvi-miR-968-5p MIMAT0035586 Drosophila virilis miR-968-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>eca-miR-9093 MIMAT0034638 Equus caballus miR-9093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtagtc 7
||||||
Sbjct: 3 gtagtc 8
>ppc-miR-8329-3p MIMAT0033203 Pristionchus pacificus miR-8329-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ssa-miR-199a-3p MIMAT0032461 Salmo salar miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>oar-miR-199a-3p MIMAT0030040 Ovis aries miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ipu-miR-199a-3p MIMAT0031093 Ictalurus punctatus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ccr-miR-199-3p MIMAT0026256 Cyprinus carpio miR-199-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>mmu-miR-7076-3p MIMAT0028059 Mus musculus miR-7076-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtagtc 7
||||||
Sbjct: 7 gtagtc 2
>pol-miR-199a-3p MIMAT0025441 Paralichthys olivaceus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ggo-miR-3129 MIMAT0024265 Gorilla gorilla miR-3129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ptr-miR-3129 MIMAT0024041 Pan troglodytes miR-3129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>cgr-miR-199a-3p MIMAT0023837 Cricetulus griseus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>hco-miR-5989 MIMAT0023505 Haemonchus contortus miR-5989
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtagtc 7
||||||
Sbjct: 1 gtagtc 6
>sha-miR-199a MIMAT0022785 Sarcophilus harrisii miR-199a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ola-miR-199a-3p MIMAT0022539 Oryzias latipes miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>bfl-miR-4877 MIMAT0020460 Branchiostoma floridae miR-4877
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 1 agtagt 6
>ppy-miR-606 MIMAT0016048 Pongo pygmaeus miR-606
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtagt 6
||||||
Sbjct: 8 agtagt 3
>ppy-miR-199a-3p MIMAT0015793 Pongo pygmaeus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>hsa-miR-3129-5p MIMAT0014992 Homo sapiens miR-3129-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>api-miR-3025 MIMAT0014761 Acyrthosiphon pisum miR-3025
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 1 agtagt 6
>tgu-miR-199-3p MIMAT0014617 Taeniopygia guttata miR-199-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ssc-miR-199a-3p MIMAT0013875 Sus scrofa miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>eca-miR-199b-3p MIMAT0013781 Equus caballus miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>eca-miR-199a-3p MIMAT0012961 Equus caballus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ptr-miR-606 MIMAT0012810 Pan troglodytes miR-606
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtagt 6
||||||
Sbjct: 8 agtagt 3
>dsi-miR-968-5p MIMAT0012441 Drosophila simulans miR-968-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>dps-miR-968-5p MIMAT0012245 Drosophila pseudoobscura miR-968-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>crm-miR-64a-3p MIMAT0011634 Caenorhabditis remanei miR-64a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtagtc 7
||||||
Sbjct: 7 gtagtc 2
>ptr-miR-199b MIMAT0008062 Pan troglodytes miR-199b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>ptr-miR-199a-3p MIMAT0009192 Pan troglodytes miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>cfa-miR-1844 MIMAT0006740 Canis familiaris miR-1844
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtagtc 7
||||||
Sbjct: 8 gtagtc 3
>cfa-miR-199 MIMAT0006642 Canis familiaris miR-199
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>mml-miR-199a-3p MIMAT0006232 Macaca mulatta miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>cin-miR-199-3p MIMAT0006109 Ciona intestinalis miR-199-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>oan-miR-199-3p MIMAT0007173 Ornithorhynchus anatinus miR-199-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>oan-miR-222b-5p MIMAT0007056 Ornithorhynchus anatinus
miR-222b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>tae-miR1121 MIMAT0005356 Triticum aestivum miR1121
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 1 agtagt 6
>ppt-miR1061-3p MIMAT0005180 Physcomitrella patens miR1061-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>dme-miR-968-5p MIMAT0005484 Drosophila melanogaster miR-968-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>mdo-miR-199b-3p MIMAT0026678 Monodelphis domestica miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>bta-miR-199a-3p MIMAT0003746 Bos taurus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>hsa-miR-606 MIMAT0003274 Homo sapiens miR-606
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtagt 6
||||||
Sbjct: 8 agtagt 3
>kshv-miR-K12-5-5p MIMAT0015218 Kaposi sarcoma-associated
miR-K12-5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtagtc 7
||||||
Sbjct: 3 gtagtc 8
>ptc-miR480 MIMAT0002096 Populus trichocarpa miR480
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtagt 6
||||||
Sbjct: 6 agtagt 1
>dre-miR-199-3-3p MIMAT0031922 Danio rerio miR-199-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>rno-miR-199a-3p MIMAT0004738 Rattus norvegicus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>mmu-miR-199b-3p MIMAT0004667 Mus musculus miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>rno-miR-352 MIMAT0000610 Rattus norvegicus miR-352
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>cbr-miR-252 MIMAT0000507 Caenorhabditis briggsae miR-252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>hsa-miR-199b-3p MIMAT0004563 Homo sapiens miR-199b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>hsa-miR-199a-3p MIMAT0000232 Homo sapiens miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
>mmu-miR-199a-3p MIMAT0000230 Mus musculus miR-199a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtagt 6
||||||
Sbjct: 3 agtagt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 92
Number of extensions: 84
Number of successful extensions: 68
Number of sequences better than 100.0: 68
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
