BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ttv-tth8-miR-t1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7757-3p.1 MIMAT0030261 Brachypodium distachyon miR7757-3p.1 14 27
mml-miR-5697-5p MIMAT0029912 Macaca mulatta miR-5697-5p 14 27
mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p 14 27
ath-miR5636 MIMAT0022396 Arabidopsis thaliana miR5636 14 27
hsa-miR-4703-3p MIMAT0019802 Homo sapiens miR-4703-3p 14 27
ppy-miR-1244 MIMAT0016169 Pongo pygmaeus miR-1244 14 27
ppy-miR-606 MIMAT0016048 Pongo pygmaeus miR-606 14 27
ptr-miR-606 MIMAT0012810 Pan troglodytes miR-606 14 27
bdi-miR1127 MIMAT0012190 Brachypodium distachyon miR1127 14 27
ptr-miR-1244 MIMAT0007970 Pan troglodytes miR-1244 14 27
hsa-miR-1244 MIMAT0005896 Homo sapiens miR-1244 14 27
hsa-miR-606 MIMAT0003274 Homo sapiens miR-606 14 27
>bdi-miR7757-3p.1 MIMAT0030261 Brachypodium distachyon
miR7757-3p.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtagttg 8
|||||||
Sbjct: 2 gtagttg 8
>mml-miR-5697-5p MIMAT0029912 Macaca mulatta miR-5697-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtt 7
|||||||
Sbjct: 2 agtagtt 8
>mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtagttg 8
|||||||
Sbjct: 1 gtagttg 7
>ath-miR5636 MIMAT0022396 Arabidopsis thaliana miR5636
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtagttg 8
|||||||
Sbjct: 2 gtagttg 8
>hsa-miR-4703-3p MIMAT0019802 Homo sapiens miR-4703-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtagttg 8
|||||||
Sbjct: 2 gtagttg 8
>ppy-miR-1244 MIMAT0016169 Pongo pygmaeus miR-1244
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtt 7
|||||||
Sbjct: 2 agtagtt 8
>ppy-miR-606 MIMAT0016048 Pongo pygmaeus miR-606
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtagtt 7
|||||||
Sbjct: 8 agtagtt 2
>ptr-miR-606 MIMAT0012810 Pan troglodytes miR-606
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtagtt 7
|||||||
Sbjct: 8 agtagtt 2
>bdi-miR1127 MIMAT0012190 Brachypodium distachyon miR1127
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtagtt 7
|||||||
Sbjct: 7 agtagtt 1
>ptr-miR-1244 MIMAT0007970 Pan troglodytes miR-1244
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtt 7
|||||||
Sbjct: 2 agtagtt 8
>hsa-miR-1244 MIMAT0005896 Homo sapiens miR-1244
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtagtt 7
|||||||
Sbjct: 2 agtagtt 8
>hsa-miR-606 MIMAT0003274 Homo sapiens miR-606
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtagtt 7
|||||||
Sbjct: 8 agtagtt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 115
Number of successful extensions: 92
Number of sequences better than 100.0: 12
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
