BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-4-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
atr-miR828 MIMAT0033948 Amborella trichopoda miR828 14 20
str-miR-8379b-5p MIMAT0033469 Strongyloides ratti miR-8379b-5p 14 20
oha-miR-16a-3p MIMAT0036745 Ophiophagus hannah miR-16a-3p 12 80
ppc-miR-8265-3p MIMAT0033015 Pristionchus pacificus miR-8265-3p 12 80
cpa-miR8147 MIMAT0031844 Carica papaya miR8147 12 80
cpa-miR8141 MIMAT0031838 Carica papaya miR8141 12 80
mdo-miR-7352-5p MIMAT0028716 Monodelphis domestica miR-7352-5p 12 80
mdm-miR7126 MIMAT0026060 Malus domestica miR7126 12 80
gga-miR-6669-5p MIMAT0025770 Gallus gallus miR-6669-5p 12 80
hsa-miR-6506-3p MIMAT0025469 Homo sapiens miR-6506-3p 12 80
prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4 12 80
nta-miR6149b MIMAT0024740 Nicotiana tabacum miR6149b 12 80
nta-miR6149a MIMAT0024739 Nicotiana tabacum miR6149a 12 80
asu-miR-50-3p MIMAT0021462 Ascaris suum miR-50-3p 12 80
isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306 12 80
cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a 12 80
cin-miR-3575-3p MIMAT0016395 Ciona intestinalis miR-3575-3p 12 80
aly-miR781-3p MIMAT0017598 Arabidopsis lyrata miR781-3p 12 80
mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199 12 80
dme-miR-992-5p MIMAT0020891 Drosophila melanogaster miR-992-5p 12 80
ppt-miR1217-5p MIMAT0004830 Physcomitrella patens miR1217-5p 12 80
>atr-miR828 MIMAT0033948 Amborella trichopoda miR828
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtatca 7
|||||||
Sbjct: 7 agtatca 1
>str-miR-8379b-5p MIMAT0033469 Strongyloides ratti miR-8379b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtatca 7
|||||||
Sbjct: 7 agtatca 1
>oha-miR-16a-3p MIMAT0036745 Ophiophagus hannah miR-16a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 3 agtatc 8
>ppc-miR-8265-3p MIMAT0033015 Pristionchus pacificus miR-8265-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatca 7
||||||
Sbjct: 8 gtatca 3
>cpa-miR8147 MIMAT0031844 Carica papaya miR8147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatca 7
||||||
Sbjct: 8 gtatca 3
>cpa-miR8141 MIMAT0031838 Carica papaya miR8141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtatc 6
||||||
Sbjct: 8 agtatc 3
>mdo-miR-7352-5p MIMAT0028716 Monodelphis domestica miR-7352-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 3 agtatc 8
>mdm-miR7126 MIMAT0026060 Malus domestica miR7126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 3 agtatc 8
>gga-miR-6669-5p MIMAT0025770 Gallus gallus miR-6669-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatca 7
||||||
Sbjct: 8 gtatca 3
>hsa-miR-6506-3p MIMAT0025469 Homo sapiens miR-6506-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtatca 7
||||||
Sbjct: 3 gtatca 8
>prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 3 agtatc 8
>nta-miR6149b MIMAT0024740 Nicotiana tabacum miR6149b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatca 7
||||||
Sbjct: 7 gtatca 2
>nta-miR6149a MIMAT0024739 Nicotiana tabacum miR6149a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatca 7
||||||
Sbjct: 7 gtatca 2
>asu-miR-50-3p MIMAT0021462 Ascaris suum miR-50-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 3 agtatc 8
>isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 3 agtatc 8
>cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 3 agtatc 8
>cin-miR-3575-3p MIMAT0016395 Ciona intestinalis miR-3575-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtatc 6
||||||
Sbjct: 6 agtatc 1
>aly-miR781-3p MIMAT0017598 Arabidopsis lyrata miR781-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtatc 6
||||||
Sbjct: 1 agtatc 6
>mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtatca 7
||||||
Sbjct: 6 gtatca 1
>dme-miR-992-5p MIMAT0020891 Drosophila melanogaster miR-992-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtatca 7
||||||
Sbjct: 3 gtatca 8
>ppt-miR1217-5p MIMAT0004830 Physcomitrella patens miR1217-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtatca 7
||||||
Sbjct: 3 gtatca 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 24
Number of extensions: 22
Number of successful extensions: 21
Number of sequences better than 100.0: 21
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 21
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
