BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-6
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sbi-miR5565f MIMAT0022244 Sorghum bicolor miR5565f 14 20
ppc-miR-63h MIMAT0011678 Pristionchus pacificus miR-63h 14 20
spu-miR-92b-5p MIMAT0019160 Strongylocentrotus purpuratus miR-92... 14 20
bdi-miR9481b MIMAT0035499 Brachypodium distachyon miR9481b 12 80
bdi-miR9481a MIMAT0035487 Brachypodium distachyon miR9481a 12 80
gsa-miR-1175-5p MIMAT0035254 Gyrodactylus salaris miR-1175-5p 12 80
dme-miR-9374-3p MIMAT0035212 Drosophila melanogaster miR-9374-3p 12 80
efu-miR-9231 MIMAT0034836 Eptesicus fuscus miR-9231 12 80
str-miR-360-3p MIMAT0033461 Strongyloides ratti miR-360-3p 12 80
str-miR-7880j-5p MIMAT0033350 Strongyloides ratti miR-7880j-5p 12 80
mdo-miR-7385a-5p MIMAT0028826 Monodelphis domestica miR-7385a-5p 12 80
hsa-miR-6510-3p MIMAT0025477 Homo sapiens miR-6510-3p 12 80
hco-miR-5938 MIMAT0023433 Haemonchus contortus miR-5938 12 80
hsa-miR-4785 MIMAT0019949 Homo sapiens miR-4785 12 80
vvi-miR3634-3p MIMAT0018040 Vitis vinifera miR3634-3p 12 80
esi-miR3461-3p MIMAT0017766 Ectocarpus siliculosus miR3461-3p 12 80
mmu-miR-1964-3p MIMAT0009437 Mus musculus miR-1964-3p 12 80
>sbi-miR5565f MIMAT0022244 Sorghum bicolor miR5565f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtcgga 7
|||||||
Sbjct: 2 agtcgga 8
>ppc-miR-63h MIMAT0011678 Pristionchus pacificus miR-63h
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtcgga 7
|||||||
Sbjct: 7 agtcgga 1
>spu-miR-92b-5p MIMAT0019160 Strongylocentrotus purpuratus
miR-92b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtcgga 7
|||||||
Sbjct: 2 agtcgga 8
>bdi-miR9481b MIMAT0035499 Brachypodium distachyon miR9481b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtcgg 6
||||||
Sbjct: 3 agtcgg 8
>bdi-miR9481a MIMAT0035487 Brachypodium distachyon miR9481a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtcgg 6
||||||
Sbjct: 3 agtcgg 8
>gsa-miR-1175-5p MIMAT0035254 Gyrodactylus salaris miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtcgga 7
||||||
Sbjct: 1 gtcgga 6
>dme-miR-9374-3p MIMAT0035212 Drosophila melanogaster
miR-9374-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtcgg 6
||||||
Sbjct: 1 agtcgg 6
>efu-miR-9231 MIMAT0034836 Eptesicus fuscus miR-9231
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtcgg 6
||||||
Sbjct: 3 agtcgg 8
>str-miR-360-3p MIMAT0033461 Strongyloides ratti miR-360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtcgga 7
||||||
Sbjct: 3 gtcgga 8
>str-miR-7880j-5p MIMAT0033350 Strongyloides ratti miR-7880j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtcgga 7
||||||
Sbjct: 3 gtcgga 8
>mdo-miR-7385a-5p MIMAT0028826 Monodelphis domestica
miR-7385a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtcgga 7
||||||
Sbjct: 3 gtcgga 8
>hsa-miR-6510-3p MIMAT0025477 Homo sapiens miR-6510-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtcgg 6
||||||
Sbjct: 8 agtcgg 3
>hco-miR-5938 MIMAT0023433 Haemonchus contortus miR-5938
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtcgg 6
||||||
Sbjct: 8 agtcgg 3
>hsa-miR-4785 MIMAT0019949 Homo sapiens miR-4785
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtcgg 6
||||||
Sbjct: 3 agtcgg 8
>vvi-miR3634-3p MIMAT0018040 Vitis vinifera miR3634-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtcgga 7
||||||
Sbjct: 8 gtcgga 3
>esi-miR3461-3p MIMAT0017766 Ectocarpus siliculosus miR3461-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtcgga 7
||||||
Sbjct: 6 gtcgga 1
>mmu-miR-1964-3p MIMAT0009437 Mus musculus miR-1964-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtcgg 6
||||||
Sbjct: 6 agtcgg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 29
Number of extensions: 26
Number of successful extensions: 17
Number of sequences better than 100.0: 17
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
