BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b20-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9393-5p MIMAT0035330 Gyrodactylus salaris miR-9393-5p 14 27
eca-miR-8977 MIMAT0034514 Equus caballus miR-8977 14 27
gra-miR8646 MIMAT0034004 Gossypium raimondii miR8646 14 27
mmu-miR-7070-5p MIMAT0028046 Mus musculus miR-7070-5p 14 27
mmu-miR-6939-3p MIMAT0027779 Mus musculus miR-6939-3p 14 27
mmu-miR-6927-5p MIMAT0027754 Mus musculus miR-6927-5p 14 27
mmu-miR-6923-5p MIMAT0027746 Mus musculus miR-6923-5p 14 27
hsa-miR-6834-5p MIMAT0027568 Homo sapiens miR-6834-5p 14 27
tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p 14 27
sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii miR-4818b-5p 14 27
hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p 14 27
bta-miR-2309 MIMAT0011821 Bos taurus miR-2309 14 27
osa-miR1846c-5p MIMAT0009165 Oryza sativa miR1846c-5p 14 27
osa-miR1846b-5p MIMAT0007790 Oryza sativa miR1846b-5p 14 27
osa-miR1846a-5p MIMAT0007788 Oryza sativa miR1846a-5p 14 27
hsa-miR-1226-5p MIMAT0005576 Homo sapiens miR-1226-5p 14 27
ppt-miR1062 MIMAT0005181 Physcomitrella patens miR1062 14 27
dre-miR-430i-5p MIMAT0032003 Danio rerio miR-430i-5p 14 27
dre-miR-430a-17-5p MIMAT0032002 Danio rerio miR-430a-17-5p 14 27
dre-miR-430a-16-5p MIMAT0032001 Danio rerio miR-430a-16-5p 14 27
dre-miR-430a-15-5p MIMAT0032000 Danio rerio miR-430a-15-5p 14 27
dre-miR-430a-14-5p MIMAT0031999 Danio rerio miR-430a-14-5p 14 27
dre-miR-430a-13-5p MIMAT0031998 Danio rerio miR-430a-13-5p 14 27
dre-miR-430a-12-5p MIMAT0031997 Danio rerio miR-430a-12-5p 14 27
dre-miR-430a-11-5p MIMAT0031996 Danio rerio miR-430a-11-5p 14 27
dre-miR-430a-4-5p MIMAT0031995 Danio rerio miR-430a-4-5p 14 27
dre-miR-430a-5p MIMAT0031994 Danio rerio miR-430a-5p 14 27
>gsa-miR-9393-5p MIMAT0035330 Gyrodactylus salaris miR-9393-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgaggg 8
|||||||
Sbjct: 1 gtgaggg 7
>eca-miR-8977 MIMAT0034514 Equus caballus miR-8977
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgagg 7
|||||||
Sbjct: 1 agtgagg 7
>gra-miR8646 MIMAT0034004 Gossypium raimondii miR8646
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgagg 7
|||||||
Sbjct: 2 agtgagg 8
>mmu-miR-7070-5p MIMAT0028046 Mus musculus miR-7070-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgaggg 8
|||||||
Sbjct: 1 gtgaggg 7
>mmu-miR-6939-3p MIMAT0027779 Mus musculus miR-6939-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgagg 7
|||||||
Sbjct: 7 agtgagg 1
>mmu-miR-6927-5p MIMAT0027754 Mus musculus miR-6927-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgaggg 8
|||||||
Sbjct: 1 gtgaggg 7
>mmu-miR-6923-5p MIMAT0027746 Mus musculus miR-6923-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgaggg 8
|||||||
Sbjct: 1 gtgaggg 7
>hsa-miR-6834-5p MIMAT0027568 Homo sapiens miR-6834-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgaggg 8
|||||||
Sbjct: 1 gtgaggg 7
>tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgagg 7
|||||||
Sbjct: 7 agtgagg 1
>sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii
miR-4818b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgagg 7
|||||||
Sbjct: 7 agtgagg 1
>hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgagg 7
|||||||
Sbjct: 2 agtgagg 8
>bta-miR-2309 MIMAT0011821 Bos taurus miR-2309
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgaggg 8
|||||||
Sbjct: 2 gtgaggg 8
>osa-miR1846c-5p MIMAT0009165 Oryza sativa miR1846c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgagg 7
|||||||
Sbjct: 1 agtgagg 7
>osa-miR1846b-5p MIMAT0007790 Oryza sativa miR1846b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgagg 7
|||||||
Sbjct: 1 agtgagg 7
>osa-miR1846a-5p MIMAT0007788 Oryza sativa miR1846a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgagg 7
|||||||
Sbjct: 1 agtgagg 7
>hsa-miR-1226-5p MIMAT0005576 Homo sapiens miR-1226-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgaggg 8
|||||||
Sbjct: 1 gtgaggg 7
>ppt-miR1062 MIMAT0005181 Physcomitrella patens miR1062
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430i-5p MIMAT0032003 Danio rerio miR-430i-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-17-5p MIMAT0032002 Danio rerio miR-430a-17-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-16-5p MIMAT0032001 Danio rerio miR-430a-16-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-15-5p MIMAT0032000 Danio rerio miR-430a-15-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-14-5p MIMAT0031999 Danio rerio miR-430a-14-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-13-5p MIMAT0031998 Danio rerio miR-430a-13-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-12-5p MIMAT0031997 Danio rerio miR-430a-12-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-11-5p MIMAT0031996 Danio rerio miR-430a-11-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-4-5p MIMAT0031995 Danio rerio miR-430a-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-5p MIMAT0031994 Danio rerio miR-430a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgaggg 8
|||||||
Sbjct: 8 gtgaggg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 247
Number of extensions: 220
Number of successful extensions: 153
Number of sequences better than 100.0: 27
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 27
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)