BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b6
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-290b-3p MIMAT0029901 Mus musculus miR-290b-3p                  14      20
mdo-miR-1545c-5p MIMAT0028752 Monodelphis domestica miR-1545c-5p       14      20
gga-miR-6578-3p MIMAT0025664 Gallus gallus miR-6578-3p                 14      20
hsa-miR-371b-3p MIMAT0019893 Homo sapiens miR-371b-3p                  14      20
bhv1-miR-B6-5p MIMAT0013967 Bovine herpesvirus miR-B6-5p               14      20
gga-miR-1585 MIMAT0007447 Gallus gallus miR-1585                       14      20
ocu-miR-290-3p MIMAT0036328 Oryctolagus cuniculus miR-290-3p           12      80
chi-miR-1271-3p MIMAT0035932 Capra hircus miR-1271-3p                  12      80
gra-miR399 MIMAT0034146 Gossypium raimondii miR399                     12      80
ppc-miR-8247-5p MIMAT0032958 Pristionchus pacificus miR-8247-5p        12      80
mmu-miR-8096 MIMAT0031398 Mus musculus miR-8096                        12      80
prd-miR-7969-5p MIMAT0030840 Panagrellus redivivus miR-7969-5p         12      80
prd-miR-7876-3p MIMAT0030505 Panagrellus redivivus miR-7876-3p         12      80
ipu-miR-183 MIMAT0029440 Ictalurus punctatus miR-183                   12      80
oan-miR-124a-2-3p MIMAT0031068 Ornithorhynchus anatinus miR-124a...    12      80
mdo-miR-7314-3p MIMAT0028629 Monodelphis domestica miR-7314-3p         12      80
mmu-miR-7222-5p MIMAT0028412 Mus musculus miR-7222-5p                  12      80
ssc-miR-7139-3p MIMAT0028154 Sus scrofa miR-7139-3p                    12      80
gga-miR-6672-3p MIMAT0025774 Gallus gallus miR-6672-3p                 12      80
cgr-miR-183 MIMAT0023806 Cricetulus griseus miR-183                    12      80
ola-miR-183-5p MIMAT0022555 Oryzias latipes miR-183-5p                 12      80
tur-miR-5731-3p MIMAT0023057 Tetranychus urticae miR-5731-3p           12      80
asu-miR-5355-3p MIMAT0021571 Ascaris suum miR-5355-3p                  12      80
asu-miR-5345b MIMAT0021539 Ascaris suum miR-5345b                      12      80
asu-miR-5345a-5p MIMAT0021537 Ascaris suum miR-5345a-5p                12      80
ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335                          12      80
nvi-miR-263b MIMAT0015703 Nasonia vitripennis miR-263b                 12      80
rno-miR-293-3p MIMAT0017365 Rattus norvegicus miR-293-3p               12      80
ptr-miR-550 MIMAT0008230 Pan troglodytes miR-550                       12      80
hsa-miR-1909-5p MIMAT0007882 Homo sapiens miR-1909-5p                  12      80
mml-miR-550-5p MIMAT0006418 Macaca mulatta miR-550-5p                  12      80
oan-miR-1419a-5p MIMAT0007070 Ornithorhynchus anatinus miR-1419a-5p    12      80
oan-miR-1420b-3p MIMAT0006925 Ornithorhynchus anatinus miR-1420b-3p    12      80
cre-miR1147.1 MIMAT0005384 Chlamydomonas reinhardtii miR1147.1         12      80
mdv2-miR-M26-3p MIMAT0012544 Mareks disease miR-M26-3p                 12      80
hsa-miR-1271-3p MIMAT0022712 Homo sapiens miR-1271-3p                  12      80
hsa-miR-550a-3-5p MIMAT0020925 Homo sapiens miR-550a-3-5p              12      80
hsa-miR-550a-5p MIMAT0004800 Homo sapiens miR-550a-5p                  12      80
mmu-miR-467a-5p MIMAT0003409 Mus musculus miR-467a-5p                  12      80
zma-miR164b-3p MIMAT0015138 Zea mays miR164b-3p                        12      80
mmu-miR-293-3p MIMAT0000371 Mus musculus miR-293-3p                    12      80
mmu-miR-292a-3p MIMAT0000370 Mus musculus miR-292a-3p                  12      80
mmu-miR-290a-3p MIMAT0004572 Mus musculus miR-290a-3p                  12      80
>mmu-miR-290b-3p MIMAT0029901 Mus musculus miR-290b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agtgccc 7
         |||||||
Sbjct: 2 agtgccc 8
>mdo-miR-1545c-5p MIMAT0028752 Monodelphis domestica
         miR-1545c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agtgccc 7
         |||||||
Sbjct: 1 agtgccc 7
>gga-miR-6578-3p MIMAT0025664 Gallus gallus miR-6578-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtgccc 7
         |||||||
Sbjct: 7 agtgccc 1
>hsa-miR-371b-3p MIMAT0019893 Homo sapiens miR-371b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agtgccc 7
         |||||||
Sbjct: 2 agtgccc 8
>bhv1-miR-B6-5p MIMAT0013967 Bovine herpesvirus miR-B6-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agtgccc 7
         |||||||
Sbjct: 2 agtgccc 8
>gga-miR-1585 MIMAT0007447 Gallus gallus miR-1585
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agtgccc 7
         |||||||
Sbjct: 1 agtgccc 7
>ocu-miR-290-3p MIMAT0036328 Oryctolagus cuniculus miR-290-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>chi-miR-1271-3p MIMAT0035932 Capra hircus miR-1271-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>gra-miR399 MIMAT0034146 Gossypium raimondii miR399
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 6 gtgccc 1
>ppc-miR-8247-5p MIMAT0032958 Pristionchus pacificus miR-8247-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 3 agtgcc 8
>mmu-miR-8096 MIMAT0031398 Mus musculus miR-8096
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 6 gtgccc 1
>prd-miR-7969-5p MIMAT0030840 Panagrellus redivivus miR-7969-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 3 gtgccc 8
>prd-miR-7876-3p MIMAT0030505 Panagrellus redivivus miR-7876-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>ipu-miR-183 MIMAT0029440 Ictalurus punctatus miR-183
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>oan-miR-124a-2-3p MIMAT0031068 Ornithorhynchus anatinus
         miR-124a-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 8 gtgccc 3
>mdo-miR-7314-3p MIMAT0028629 Monodelphis domestica miR-7314-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>mmu-miR-7222-5p MIMAT0028412 Mus musculus miR-7222-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 6 agtgcc 1
>ssc-miR-7139-3p MIMAT0028154 Sus scrofa miR-7139-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 8 gtgccc 3
>gga-miR-6672-3p MIMAT0025774 Gallus gallus miR-6672-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 7 gtgccc 2
>cgr-miR-183 MIMAT0023806 Cricetulus griseus miR-183
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>ola-miR-183-5p MIMAT0022555 Oryzias latipes miR-183-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>tur-miR-5731-3p MIMAT0023057 Tetranychus urticae miR-5731-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 7 gtgccc 2
>asu-miR-5355-3p MIMAT0021571 Ascaris suum miR-5355-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 3 gtgccc 8
>asu-miR-5345b MIMAT0021539 Ascaris suum miR-5345b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>asu-miR-5345a-5p MIMAT0021537 Ascaris suum miR-5345a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 1 gtgccc 6
>nvi-miR-263b MIMAT0015703 Nasonia vitripennis miR-263b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 8 agtgcc 3
>rno-miR-293-3p MIMAT0017365 Rattus norvegicus miR-293-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>ptr-miR-550 MIMAT0008230 Pan troglodytes miR-550
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>hsa-miR-1909-5p MIMAT0007882 Homo sapiens miR-1909-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 3 agtgcc 8
>mml-miR-550-5p MIMAT0006418 Macaca mulatta miR-550-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>oan-miR-1419a-5p MIMAT0007070 Ornithorhynchus anatinus
         miR-1419a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>oan-miR-1420b-3p MIMAT0006925 Ornithorhynchus anatinus
         miR-1420b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 3 agtgcc 8
>cre-miR1147.1 MIMAT0005384 Chlamydomonas reinhardtii miR1147.1
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>mdv2-miR-M26-3p MIMAT0012544 Mareks disease miR-M26-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 8 gtgccc 3
>hsa-miR-1271-3p MIMAT0022712 Homo sapiens miR-1271-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>hsa-miR-550a-3-5p MIMAT0020925 Homo sapiens miR-550a-3-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>hsa-miR-550a-5p MIMAT0004800 Homo sapiens miR-550a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>mmu-miR-467a-5p MIMAT0003409 Mus musculus miR-467a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 3 agtgcc 8
>zma-miR164b-3p MIMAT0015138 Zea mays miR164b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gtgccc 7
         ||||||
Sbjct: 3 gtgccc 8
>mmu-miR-293-3p MIMAT0000371 Mus musculus miR-293-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 1 agtgcc 6
>mmu-miR-292a-3p MIMAT0000370 Mus musculus miR-292a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 3 agtgcc 8
>mmu-miR-290a-3p MIMAT0004572 Mus musculus miR-290a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agtgcc 6
         ||||||
Sbjct: 3 agtgcc 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 82
Number of extensions: 76
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)