BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-10-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dme-miR-9381-3p MIMAT0035226 Drosophila melanogaster miR-9381-3p 14 20
mdo-miR-1545a-5p MIMAT0026769 Monodelphis domestica miR-1545a-5p 14 20
rlcv-miR-rL1-10-3p MIMAT0003439 Rhesus lymphocryptovirus miR-rL1... 14 20
ggo-miR-521 MIMAT0036436 Gorilla gorilla miR-521 12 80
eca-miR-9088 MIMAT0034633 Equus caballus miR-9088 12 80
prd-miR-7944-5p MIMAT0030748 Panagrellus redivivus miR-7944-5p 12 80
lja-miR7518 MIMAT0029333 Lotus japonicus miR7518 12 80
hsa-miR-6722-5p MIMAT0025853 Homo sapiens miR-6722-5p 12 80
bta-miR-6532 MIMAT0025568 Bos taurus miR-6532 12 80
dme-miR-4957-5p MIMAT0020175 Drosophila melanogaster miR-4957-5p 12 80
cin-miR-4169-3p MIMAT0016777 Ciona intestinalis miR-4169-3p 12 80
sja-miR-3482-3p MIMAT0016285 Schistosoma japonicum miR-3482-3p 12 80
ppy-miR-521 MIMAT0015977 Pongo pygmaeus miR-521 12 80
mmu-miR-3076-3p MIMAT0014861 Mus musculus miR-3076-3p 12 80
ptr-miR-521 MIMAT0008205 Pan troglodytes miR-521 12 80
mml-miR-521 MIMAT0006397 Macaca mulatta miR-521 12 80
gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p 12 80
oan-miR-1409-3p MIMAT0007227 Ornithorhynchus anatinus miR-1409-3p 12 80
oan-miR-1420f MIMAT0006944 Ornithorhynchus anatinus miR-1420f 12 80
oan-miR-1420e-3p MIMAT0006929 Ornithorhynchus anatinus miR-1420e-3p 12 80
mmu-miR-467d-5p MIMAT0004886 Mus musculus miR-467d-5p 12 80
mmu-miR-467c-5p MIMAT0004885 Mus musculus miR-467c-5p 12 80
hsa-miR-521 MIMAT0002854 Homo sapiens miR-521 12 80
mml-miR-106b-3p MIMAT0026601 Macaca mulatta miR-106b-3p 12 80
>dme-miR-9381-3p MIMAT0035226 Drosophila melanogaster
miR-9381-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgcgc 7
|||||||
Sbjct: 8 agtgcgc 2
>mdo-miR-1545a-5p MIMAT0026769 Monodelphis domestica
miR-1545a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgcgc 7
|||||||
Sbjct: 1 agtgcgc 7
>rlcv-miR-rL1-10-3p MIMAT0003439 Rhesus lymphocryptovirus
miR-rL1-10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgcgc 7
|||||||
Sbjct: 2 agtgcgc 8
>ggo-miR-521 MIMAT0036436 Gorilla gorilla miR-521
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
>eca-miR-9088 MIMAT0034633 Equus caballus miR-9088
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgcgc 7
||||||
Sbjct: 8 gtgcgc 3
>prd-miR-7944-5p MIMAT0030748 Panagrellus redivivus miR-7944-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
>lja-miR7518 MIMAT0029333 Lotus japonicus miR7518
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgcgc 7
||||||
Sbjct: 8 gtgcgc 3
>hsa-miR-6722-5p MIMAT0025853 Homo sapiens miR-6722-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgcgc 7
||||||
Sbjct: 8 gtgcgc 3
>bta-miR-6532 MIMAT0025568 Bos taurus miR-6532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgcg 6
||||||
Sbjct: 1 agtgcg 6
>dme-miR-4957-5p MIMAT0020175 Drosophila melanogaster
miR-4957-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
>cin-miR-4169-3p MIMAT0016777 Ciona intestinalis miR-4169-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgcgc 7
||||||
Sbjct: 8 gtgcgc 3
>sja-miR-3482-3p MIMAT0016285 Schistosoma japonicum miR-3482-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgcgc 7
||||||
Sbjct: 8 gtgcgc 3
>ppy-miR-521 MIMAT0015977 Pongo pygmaeus miR-521
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
>mmu-miR-3076-3p MIMAT0014861 Mus musculus miR-3076-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 6 agtgcg 1
>ptr-miR-521 MIMAT0008205 Pan troglodytes miR-521
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
>mml-miR-521 MIMAT0006397 Macaca mulatta miR-521
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
>gga-miR-1552-5p MIMAT0007407 Gallus gallus miR-1552-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgcg 6
||||||
Sbjct: 3 agtgcg 8
>oan-miR-1409-3p MIMAT0007227 Ornithorhynchus anatinus
miR-1409-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgcgc 7
||||||
Sbjct: 8 gtgcgc 3
>oan-miR-1420f MIMAT0006944 Ornithorhynchus anatinus miR-1420f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgcg 6
||||||
Sbjct: 3 agtgcg 8
>oan-miR-1420e-3p MIMAT0006929 Ornithorhynchus anatinus
miR-1420e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgcg 6
||||||
Sbjct: 3 agtgcg 8
>mmu-miR-467d-5p MIMAT0004886 Mus musculus miR-467d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgcg 6
||||||
Sbjct: 3 agtgcg 8
>mmu-miR-467c-5p MIMAT0004885 Mus musculus miR-467c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgcg 6
||||||
Sbjct: 3 agtgcg 8
>hsa-miR-521 MIMAT0002854 Homo sapiens miR-521
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
>mml-miR-106b-3p MIMAT0026601 Macaca mulatta miR-106b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgcg 6
||||||
Sbjct: 8 agtgcg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 37
Number of successful extensions: 24
Number of sequences better than 100.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
