BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s72
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR5037c MIMAT0021606 Glycine max miR5037c 16 6.9
ata-miR9677-5p MIMAT0037224 Aegilops tauschii miR9677-5p 14 27
dvi-miR-969-5p MIMAT0035588 Drosophila virilis miR-969-5p 14 27
gsa-miR-1993-5p MIMAT0035300 Gyrodactylus salaris miR-1993-5p 14 27
gra-miR8736 MIMAT0034148 Gossypium raimondii miR8736 14 27
gra-miR8650 MIMAT0034008 Gossypium raimondii miR8650 14 27
rgl-miR7799 MIMAT0032240 Rehmannia glutinosa miR7799 14 27
mmu-miR-7651-5p MIMAT0029804 Mus musculus miR-7651-5p 14 27
mdo-miR-7325-3p MIMAT0028651 Monodelphis domestica miR-7325-3p 14 27
hsa-miR-6509-3p MIMAT0025475 Homo sapiens miR-6509-3p 14 27
ppe-miR6275 MIMAT0027302 Prunus persica miR6275 14 27
cin-miR-5600-3p MIMAT0022324 Ciona intestinalis miR-5600-3p 14 27
hsa-miR-3692-3p MIMAT0018122 Homo sapiens miR-3692-3p 14 27
>gma-miR5037c MIMAT0021606 Glycine max miR5037c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agtggaac 8
||||||||
Sbjct: 1 agtggaac 8
>ata-miR9677-5p MIMAT0037224 Aegilops tauschii miR9677-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggaa 7
|||||||
Sbjct: 7 agtggaa 1
>dvi-miR-969-5p MIMAT0035588 Drosophila virilis miR-969-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtggaac 8
|||||||
Sbjct: 8 gtggaac 2
>gsa-miR-1993-5p MIMAT0035300 Gyrodactylus salaris miR-1993-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggaa 7
|||||||
Sbjct: 1 agtggaa 7
>gra-miR8736 MIMAT0034148 Gossypium raimondii miR8736
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtggaac 8
|||||||
Sbjct: 1 gtggaac 7
>gra-miR8650 MIMAT0034008 Gossypium raimondii miR8650
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggaa 7
|||||||
Sbjct: 1 agtggaa 7
>rgl-miR7799 MIMAT0032240 Rehmannia glutinosa miR7799
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggaa 7
|||||||
Sbjct: 1 agtggaa 7
>mmu-miR-7651-5p MIMAT0029804 Mus musculus miR-7651-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggaa 7
|||||||
Sbjct: 2 agtggaa 8
>mdo-miR-7325-3p MIMAT0028651 Monodelphis domestica miR-7325-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggaa 7
|||||||
Sbjct: 2 agtggaa 8
>hsa-miR-6509-3p MIMAT0025475 Homo sapiens miR-6509-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggaa 7
|||||||
Sbjct: 7 agtggaa 1
>ppe-miR6275 MIMAT0027302 Prunus persica miR6275
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggaa 7
|||||||
Sbjct: 1 agtggaa 7
>cin-miR-5600-3p MIMAT0022324 Ciona intestinalis miR-5600-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggaa 7
|||||||
Sbjct: 1 agtggaa 7
>hsa-miR-3692-3p MIMAT0018122 Homo sapiens miR-3692-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtggaac 8
|||||||
Sbjct: 7 gtggaac 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 254
Number of extensions: 240
Number of successful extensions: 211
Number of sequences better than 100.0: 13
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
