BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9798-3p MIMAT0037016 Sus scrofa miR-9798-3p 14 20
prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p 14 20
hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p 14 20
asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p 14 20
hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p 14 20
hsa-miR-3681-5p MIMAT0018108 Homo sapiens miR-3681-5p 14 20
hcmv-miR-US25-2-3p MIMAT0001583 Human cytomegalovirus miR-US25-2-3p 14 20
cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p 14 20
ata-miR5062a-3p MIMAT0037187 Aegilops tauschii miR5062a-3p 12 80
ssc-miR-9825-5p MIMAT0037043 Sus scrofa miR-9825-5p 12 80
ssc-miR-9792-5p MIMAT0037010 Sus scrofa miR-9792-5p 12 80
oha-miR-194-3p MIMAT0036782 Ophiophagus hannah miR-194-3p 12 80
chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p 12 80
gsa-miR-1993-5p MIMAT0035300 Gyrodactylus salaris miR-1993-5p 12 80
dme-miR-9378-5p MIMAT0035219 Drosophila melanogaster miR-9378-5p 12 80
cfa-miR-8854 MIMAT0034349 Canis familiaris miR-8854 12 80
gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765 12 80
gra-miR8680 MIMAT0034051 Gossypium raimondii miR8680 12 80
gra-miR8650 MIMAT0034008 Gossypium raimondii miR8650 12 80
atr-miR8560 MIMAT0033833 Amborella trichopoda miR8560 12 80
ssa-miR-194c-3p MIMAT0032452 Salmo salar miR-194c-3p 12 80
ssa-miR-194b-3p MIMAT0032450 Salmo salar miR-194b-3p 12 80
ssa-miR-194a-3p MIMAT0032448 Salmo salar miR-194a-3p 12 80
hsa-miR-8056 MIMAT0030983 Homo sapiens miR-8056 12 80
prd-miR-7962-5p MIMAT0030824 Panagrellus redivivus miR-7962-5p 12 80
prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p 12 80
ptc-miR6476c MIMAT0030369 Populus trichocarpa miR6476c 12 80
ptc-miR6476b MIMAT0030368 Populus trichocarpa miR6476b 12 80
rgl-miR7799 MIMAT0032240 Rehmannia glutinosa miR7799 12 80
bdi-miR159b-3p.2 MIMAT0030085 Brachypodium distachyon miR159b-3p.2 12 80
mtr-miR172d-5p MIMAT0029978 Medicago truncatula miR172d-5p 12 80
mmu-miR-7224-3p MIMAT0028417 Mus musculus miR-7224-3p 12 80
bma-miR-5874 MIMAT0026373 Brugia malayi miR-5874 12 80
bma-miR-5846 MIMAT0026344 Brugia malayi miR-5846 12 80
mmu-miR-6989-3p MIMAT0027881 Mus musculus miR-6989-3p 12 80
mmu-miR-6974-3p MIMAT0027851 Mus musculus miR-6974-3p 12 80
hsa-miR-6777-3p MIMAT0027455 Homo sapiens miR-6777-3p 12 80
bta-miR-3956 MIMAT0025544 Bos taurus miR-3956 12 80
prv-miR-LLT5 MIMAT0025308 Pseudorabies virus miR-LLT5 12 80
ptc-miR6476a MIMAT0025217 Populus trichocarpa miR6476a 12 80
ppe-miR6275 MIMAT0027302 Prunus persica miR6275 12 80
rno-miR-378b MIMAT0024855 Rattus norvegicus miR-378b 12 80
hbr-miR6171 MIMAT0024790 Hevea brasiliensis miR6171 12 80
cca-miR6110-3p MIMAT0024548 Cynara cardunculus miR6110-3p 12 80
ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165 12 80
ola-miR-194-3p MIMAT0022623 Oryzias latipes miR-194-3p 12 80
cin-miR-5600-3p MIMAT0022324 Ciona intestinalis miR-5600-3p 12 80
aca-miR-5458 MIMAT0022085 Anolis carolinensis miR-5458 12 80
aca-miR-5447 MIMAT0022069 Anolis carolinensis miR-5447 12 80
aca-miR-363-5p MIMAT0021945 Anolis carolinensis miR-363-5p 12 80
aca-miR-194-2-3p MIMAT0021830 Anolis carolinensis miR-194-2-3p 12 80
aca-miR-194-1-3p MIMAT0021829 Anolis carolinensis miR-194-1-3p 12 80
gma-miR5037c MIMAT0021606 Glycine max miR5037c 12 80
bdi-miR5063 MIMAT0020570 Brachypodium distachyon miR5063 12 80
gma-miR5044 MIMAT0021075 Glycine max miR5044 12 80
hsa-miR-4800-5p MIMAT0019978 Homo sapiens miR-4800-5p 12 80
hsa-miR-4752 MIMAT0019889 Homo sapiens miR-4752 12 80
oar-miR-376c-5p MIMAT0019279 Ovis aries miR-376c-5p 12 80
tca-miR-3851d-3p MIMAT0018779 Tribolium castaneum miR-3851d-3p 12 80
ame-miR-3752 MIMAT0018522 Apis mellifera miR-3752 12 80
bta-miR-3578 MIMAT0016934 Bos taurus miR-3578 12 80
ssc-miR-376c MIMAT0017960 Sus scrofa miR-376c 12 80
ssc-miR-194b-3p MIMAT0017951 Sus scrofa miR-194b-3p 12 80
cin-miR-4087-3p MIMAT0016663 Ciona intestinalis miR-4087-3p 12 80
rno-miR-3595 MIMAT0017903 Rattus norvegicus miR-3595 12 80
sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p 12 80
ppy-miR-1261 MIMAT0016185 Pongo pygmaeus miR-1261 12 80
aly-miR3437-3p MIMAT0017706 Arabidopsis lyrata miR3437-3p 12 80
hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165 12 80
api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054 12 80
hma-miR-3012b MIMAT0014681 Hydra magnipapillata miR-3012b 12 80
hma-miR-3012a MIMAT0014680 Hydra magnipapillata miR-3012a 12 80
tgu-miR-194-3p MIMAT0027001 Taeniopygia guttata miR-194-3p 12 80
tgu-miR-363-5p MIMAT0026972 Taeniopygia guttata miR-363-5p 12 80
eca-miR-1261 MIMAT0012924 Equus caballus miR-1261 12 80
cte-miR-2710 MIMAT0013579 Capitella teleta miR-2710 12 80
dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura miR-2548-5p 12 80
bta-miR-376c MIMAT0009947 Bos taurus miR-376c 12 80
cfa-miR-376c MIMAT0009888 Canis familiaris miR-376c 12 80
lgi-miR-1175-5p MIMAT0009602 Lottia gigantea miR-1175-5p 12 80
cte-miR-1175-5p MIMAT0009549 Capitella teleta miR-1175-5p 12 80
mmu-miR-1951 MIMAT0009422 Mus musculus miR-1951 12 80
mml-miR-376c-5p MIMAT0026863 Macaca mulatta miR-376c-5p 12 80
oan-miR-194-3p MIMAT0007018 Ornithorhynchus anatinus miR-194-3p 12 80
rno-miR-376b-5p MIMAT0003195 Rattus norvegicus miR-376b-5p 12 80
rno-miR-376c-5p MIMAT0017219 Rattus norvegicus miR-376c-5p 12 80
mmu-miR-376c-5p MIMAT0005295 Mus musculus miR-376c-5p 12 80
mmu-miR-376b-5p MIMAT0003388 Mus musculus miR-376b-5p 12 80
mmu-miR-194-1-3p MIMAT0016999 Mus musculus miR-194-1-3p 12 80
cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p 12 80
>ssc-miR-9798-3p MIMAT0037016 Sus scrofa miR-9798-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggat 7
|||||||
Sbjct: 2 agtggat 8
>prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggat 7
|||||||
Sbjct: 1 agtggat 7
>hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggat 7
|||||||
Sbjct: 2 agtggat 8
>asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggat 7
|||||||
Sbjct: 1 agtggat 7
>hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggat 7
|||||||
Sbjct: 1 agtggat 7
>hsa-miR-3681-5p MIMAT0018108 Homo sapiens miR-3681-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggat 7
|||||||
Sbjct: 2 agtggat 8
>hcmv-miR-US25-2-3p MIMAT0001583 Human cytomegalovirus
miR-US25-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggat 7
|||||||
Sbjct: 7 agtggat 1
>cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggat 7
|||||||
Sbjct: 1 agtggat 7
>ata-miR5062a-3p MIMAT0037187 Aegilops tauschii miR5062a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>ssc-miR-9825-5p MIMAT0037043 Sus scrofa miR-9825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>ssc-miR-9792-5p MIMAT0037010 Sus scrofa miR-9792-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>oha-miR-194-3p MIMAT0036782 Ophiophagus hannah miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtggat 7
||||||
Sbjct: 6 gtggat 1
>gsa-miR-1993-5p MIMAT0035300 Gyrodactylus salaris miR-1993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>dme-miR-9378-5p MIMAT0035219 Drosophila melanogaster
miR-9378-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>cfa-miR-8854 MIMAT0034349 Canis familiaris miR-8854
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 6 agtgga 1
>gra-miR8765 MIMAT0034199 Gossypium raimondii miR8765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>gra-miR8680 MIMAT0034051 Gossypium raimondii miR8680
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>gra-miR8650 MIMAT0034008 Gossypium raimondii miR8650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>atr-miR8560 MIMAT0033833 Amborella trichopoda miR8560
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 6 agtgga 1
>ssa-miR-194c-3p MIMAT0032452 Salmo salar miR-194c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>ssa-miR-194b-3p MIMAT0032450 Salmo salar miR-194b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>ssa-miR-194a-3p MIMAT0032448 Salmo salar miR-194a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>hsa-miR-8056 MIMAT0030983 Homo sapiens miR-8056
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 2 gtggat 7
>prd-miR-7962-5p MIMAT0030824 Panagrellus redivivus miR-7962-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtggat 7
||||||
Sbjct: 8 gtggat 3
>prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>ptc-miR6476c MIMAT0030369 Populus trichocarpa miR6476c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>ptc-miR6476b MIMAT0030368 Populus trichocarpa miR6476b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>rgl-miR7799 MIMAT0032240 Rehmannia glutinosa miR7799
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>bdi-miR159b-3p.2 MIMAT0030085 Brachypodium distachyon
miR159b-3p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtggat 7
||||||
Sbjct: 6 gtggat 1
>mtr-miR172d-5p MIMAT0029978 Medicago truncatula miR172d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>mmu-miR-7224-3p MIMAT0028417 Mus musculus miR-7224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 6 agtgga 1
>bma-miR-5874 MIMAT0026373 Brugia malayi miR-5874
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 6 agtgga 1
>bma-miR-5846 MIMAT0026344 Brugia malayi miR-5846
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>mmu-miR-6989-3p MIMAT0027881 Mus musculus miR-6989-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 8 agtgga 3
>mmu-miR-6974-3p MIMAT0027851 Mus musculus miR-6974-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 8 agtgga 3
>hsa-miR-6777-3p MIMAT0027455 Homo sapiens miR-6777-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 6 agtgga 1
>bta-miR-3956 MIMAT0025544 Bos taurus miR-3956
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>prv-miR-LLT5 MIMAT0025308 Pseudorabies virus miR-LLT5
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>ptc-miR6476a MIMAT0025217 Populus trichocarpa miR6476a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>ppe-miR6275 MIMAT0027302 Prunus persica miR6275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>rno-miR-378b MIMAT0024855 Rattus norvegicus miR-378b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>hbr-miR6171 MIMAT0024790 Hevea brasiliensis miR6171
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>cca-miR6110-3p MIMAT0024548 Cynara cardunculus miR6110-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtggat 7
||||||
Sbjct: 6 gtggat 1
>ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>ola-miR-194-3p MIMAT0022623 Oryzias latipes miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>cin-miR-5600-3p MIMAT0022324 Ciona intestinalis miR-5600-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>aca-miR-5458 MIMAT0022085 Anolis carolinensis miR-5458
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtggat 7
||||||
Sbjct: 8 gtggat 3
>aca-miR-5447 MIMAT0022069 Anolis carolinensis miR-5447
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>aca-miR-363-5p MIMAT0021945 Anolis carolinensis miR-363-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>aca-miR-194-2-3p MIMAT0021830 Anolis carolinensis miR-194-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>aca-miR-194-1-3p MIMAT0021829 Anolis carolinensis miR-194-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>gma-miR5037c MIMAT0021606 Glycine max miR5037c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>bdi-miR5063 MIMAT0020570 Brachypodium distachyon miR5063
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 6 agtgga 1
>gma-miR5044 MIMAT0021075 Glycine max miR5044
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>hsa-miR-4800-5p MIMAT0019978 Homo sapiens miR-4800-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>hsa-miR-4752 MIMAT0019889 Homo sapiens miR-4752
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>oar-miR-376c-5p MIMAT0019279 Ovis aries miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>tca-miR-3851d-3p MIMAT0018779 Tribolium castaneum miR-3851d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>ame-miR-3752 MIMAT0018522 Apis mellifera miR-3752
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>bta-miR-3578 MIMAT0016934 Bos taurus miR-3578
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtggat 7
||||||
Sbjct: 8 gtggat 3
>ssc-miR-376c MIMAT0017960 Sus scrofa miR-376c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>ssc-miR-194b-3p MIMAT0017951 Sus scrofa miR-194b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>cin-miR-4087-3p MIMAT0016663 Ciona intestinalis miR-4087-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>rno-miR-3595 MIMAT0017903 Rattus norvegicus miR-3595
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>ppy-miR-1261 MIMAT0016185 Pongo pygmaeus miR-1261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>aly-miR3437-3p MIMAT0017706 Arabidopsis lyrata miR3437-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>api-miR-3054 MIMAT0014797 Acyrthosiphon pisum miR-3054
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>hma-miR-3012b MIMAT0014681 Hydra magnipapillata miR-3012b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>hma-miR-3012a MIMAT0014680 Hydra magnipapillata miR-3012a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>tgu-miR-194-3p MIMAT0027001 Taeniopygia guttata miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>tgu-miR-363-5p MIMAT0026972 Taeniopygia guttata miR-363-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>eca-miR-1261 MIMAT0012924 Equus caballus miR-1261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>cte-miR-2710 MIMAT0013579 Capitella teleta miR-2710
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgga 6
||||||
Sbjct: 6 agtgga 1
>dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura
miR-2548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 3 gtggat 8
>bta-miR-376c MIMAT0009947 Bos taurus miR-376c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>cfa-miR-376c MIMAT0009888 Canis familiaris miR-376c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>lgi-miR-1175-5p MIMAT0009602 Lottia gigantea miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>cte-miR-1175-5p MIMAT0009549 Capitella teleta miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 1 agtgga 6
>mmu-miR-1951 MIMAT0009422 Mus musculus miR-1951
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>mml-miR-376c-5p MIMAT0026863 Macaca mulatta miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>oan-miR-194-3p MIMAT0007018 Ornithorhynchus anatinus miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>rno-miR-376b-5p MIMAT0003195 Rattus norvegicus miR-376b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>rno-miR-376c-5p MIMAT0017219 Rattus norvegicus miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>mmu-miR-376c-5p MIMAT0005295 Mus musculus miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>mmu-miR-376b-5p MIMAT0003388 Mus musculus miR-376b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtggat 7
||||||
Sbjct: 1 gtggat 6
>mmu-miR-194-1-3p MIMAT0016999 Mus musculus miR-194-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgga 6
||||||
Sbjct: 3 agtgga 8
>cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtggat 7
||||||
Sbjct: 8 gtggat 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 129
Number of extensions: 121
Number of successful extensions: 90
Number of sequences better than 100.0: 90
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 90
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
