BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvav-miR-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9003 MIMAT0034543 Equus caballus miR-9003 14 20
mmu-miR-3061-5p MIMAT0014828 Mus musculus miR-3061-5p 14 20
cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans miR-1832b-3p 14 20
rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus miR-rL1-... 14 20
ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p 12 80
tch-miR-491-5p MIMAT0036566 Tupaia chinensis miR-491-5p 12 80
chi-miR-491-5p MIMAT0036251 Capra hircus miR-491-5p 12 80
sly-miR482d-5p MIMAT0035459 Solanum lycopersicum miR482d-5p 12 80
sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p 12 80
efu-miR-9246a MIMAT0034860 Eptesicus fuscus miR-9246a 12 80
pxy-miR-279a MIMAT0033755 Plutella xylostella miR-279a 12 80
sma-miR-2162-5p MIMAT0033665 Schistosoma mansoni miR-2162-5p 12 80
hbv-miR-B19-5p MIMAT0031769 Herpes B miR-B19-5p 12 80
mmu-miR-3620-5p MIMAT0029878 Mus musculus miR-3620-5p 12 80
mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p 12 80
mmu-miR-7055-5p MIMAT0028014 Mus musculus miR-7055-5p 12 80
mmu-miR-7004-3p MIMAT0027913 Mus musculus miR-7004-3p 12 80
mmu-miR-6993-5p MIMAT0027888 Mus musculus miR-6993-5p 12 80
mmu-miR-6956-5p MIMAT0027812 Mus musculus miR-6956-5p 12 80
mmu-miR-6949-5p MIMAT0027798 Mus musculus miR-6949-5p 12 80
mmu-miR-6926-5p MIMAT0027752 Mus musculus miR-6926-5p 12 80
hsa-miR-6778-5p MIMAT0027456 Homo sapiens miR-6778-5p 12 80
hsa-miR-6742-5p MIMAT0027385 Homo sapiens miR-6742-5p 12 80
tgu-miR-1669 MIMAT0025401 Taeniopygia guttata miR-1669 12 80
mmu-miR-6393 MIMAT0025143 Mus musculus miR-6393 12 80
mmu-miR-6362 MIMAT0025106 Mus musculus miR-6362 12 80
bta-miR-4286 MIMAT0024575 Bos taurus miR-4286 12 80
ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654 12 80
ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228 12 80
ggo-miR-491 MIMAT0024196 Gorilla gorilla miR-491 12 80
nta-miR482b-5p MIMAT0023604 Nicotiana tabacum miR482b-5p 12 80
stu-miR482e-5p MIMAT0031163 Solanum tuberosum miR482e-5p 12 80
stu-miR482b-5p MIMAT0031160 Solanum tuberosum miR482b-5p 12 80
tca-miR-6009-3p MIMAT0023560 Tribolium castaneum miR-6009-3p 12 80
hco-miR-5962 MIMAT0023466 Haemonchus contortus miR-5962 12 80
hco-miR-5927 MIMAT0023408 Haemonchus contortus miR-5927 12 80
asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p 12 80
bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166 12 80
ssc-miR-491 MIMAT0020592 Sus scrofa miR-491 12 80
hsa-miR-4745-5p MIMAT0019878 Homo sapiens miR-4745-5p 12 80
hsa-miR-4727-3p MIMAT0019848 Homo sapiens miR-4727-3p 12 80
pma-miR-4626 MIMAT0019660 Petromyzon marinus miR-4626 12 80
oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p 12 80
hsa-miR-4481 MIMAT0019015 Homo sapiens miR-4481 12 80
csi-miR482a-5p MIMAT0018479 Citrus sinensis miR482a-5p 12 80
gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p 12 80
hsa-miR-3620-5p MIMAT0022967 Homo sapiens miR-3620-5p 12 80
hsa-miR-4286 MIMAT0016916 Homo sapiens miR-4286 12 80
hsa-miR-4265 MIMAT0016891 Homo sapiens miR-4265 12 80
hsa-miR-4322 MIMAT0016873 Homo sapiens miR-4322 12 80
hsa-miR-4296 MIMAT0016845 Homo sapiens miR-4296 12 80
cin-miR-4165-3p MIMAT0016773 Ciona intestinalis miR-4165-3p 12 80
cin-miR-182-3p MIMAT0016412 Ciona intestinalis miR-182-3p 12 80
rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p 12 80
ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p 12 80
ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541 12 80
ppy-miR-491-5p MIMAT0015911 Pongo pygmaeus miR-491-5p 12 80
hsa-miR-3156-3p MIMAT0019209 Homo sapiens miR-3156-3p 12 80
tgu-miR-2978 MIMAT0014488 Taeniopygia guttata miR-2978 12 80
eca-miR-541 MIMAT0013168 Equus caballus miR-541 12 80
eca-miR-491-5p MIMAT0013116 Equus caballus miR-491-5p 12 80
mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p 12 80
bta-miR-541 MIMAT0009343 Bos taurus miR-541 12 80
bta-miR-491 MIMAT0009332 Bos taurus miR-491 12 80
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2 12 80
mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p 12 80
mml-miR-491-5p MIMAT0006352 Macaca mulatta miR-491-5p 12 80
gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777 12 80
gga-miR-1669 MIMAT0007553 Gallus gallus miR-1669 12 80
gga-miR-1668-5p MIMAT0007551 Gallus gallus miR-1668-5p 12 80
hsa-miR-1233-5p MIMAT0022943 Homo sapiens miR-1233-5p 12 80
hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p 12 80
rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p 12 80
hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p 12 80
mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p 12 80
mmu-miR-491-5p MIMAT0003486 Mus musculus miR-491-5p 12 80
ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p 12 80
hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p 12 80
hsa-miR-491-5p MIMAT0002807 Homo sapiens miR-491-5p 12 80
zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p 12 80
zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p 12 80
ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p 12 80
rno-miR-194-3p MIMAT0017148 Rattus norvegicus miR-194-3p 12 80
rno-miR-134-3p MIMAT0017125 Rattus norvegicus miR-134-3p 12 80
mmu-miR-194-2-3p MIMAT0017073 Mus musculus miR-194-2-3p 12 80
hsa-miR-194-3p MIMAT0004671 Homo sapiens miR-194-3p 12 80
dme-miR-279-5p MIMAT0020807 Drosophila melanogaster miR-279-5p 12 80
mmu-miR-134-3p MIMAT0016985 Mus musculus miR-134-3p 12 80
>eca-miR-9003 MIMAT0034543 Equus caballus miR-9003
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgggc 7
|||||||
Sbjct: 7 agtgggc 1
>mmu-miR-3061-5p MIMAT0014828 Mus musculus miR-3061-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggc 7
|||||||
Sbjct: 2 agtgggc 8
>cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans
miR-1832b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggc 7
|||||||
Sbjct: 1 agtgggc 7
>rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus
miR-rL1-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggc 7
|||||||
Sbjct: 1 agtgggc 7
>ata-miR394-3p MIMAT0037235 Aegilops tauschii miR394-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>tch-miR-491-5p MIMAT0036566 Tupaia chinensis miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>chi-miR-491-5p MIMAT0036251 Capra hircus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>sly-miR482d-5p MIMAT0035459 Solanum lycopersicum miR482d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>sly-miR394-3p MIMAT0035438 Solanum lycopersicum miR394-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>efu-miR-9246a MIMAT0034860 Eptesicus fuscus miR-9246a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 7 gtgggc 2
>pxy-miR-279a MIMAT0033755 Plutella xylostella miR-279a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>sma-miR-2162-5p MIMAT0033665 Schistosoma mansoni miR-2162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>hbv-miR-B19-5p MIMAT0031769 Herpes B miR-B19-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>mmu-miR-3620-5p MIMAT0029878 Mus musculus miR-3620-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 8 gtgggc 3
>mmu-miR-7055-5p MIMAT0028014 Mus musculus miR-7055-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>mmu-miR-7004-3p MIMAT0027913 Mus musculus miR-7004-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtggg 6
||||||
Sbjct: 6 agtggg 1
>mmu-miR-6993-5p MIMAT0027888 Mus musculus miR-6993-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>mmu-miR-6956-5p MIMAT0027812 Mus musculus miR-6956-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>mmu-miR-6949-5p MIMAT0027798 Mus musculus miR-6949-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>mmu-miR-6926-5p MIMAT0027752 Mus musculus miR-6926-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>hsa-miR-6778-5p MIMAT0027456 Homo sapiens miR-6778-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>hsa-miR-6742-5p MIMAT0027385 Homo sapiens miR-6742-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>tgu-miR-1669 MIMAT0025401 Taeniopygia guttata miR-1669
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>mmu-miR-6393 MIMAT0025143 Mus musculus miR-6393
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 8 gtgggc 3
>mmu-miR-6362 MIMAT0025106 Mus musculus miR-6362
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>bta-miR-4286 MIMAT0024575 Bos taurus miR-4286
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtggg 6
||||||
Sbjct: 8 agtggg 3
>ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>ggo-miR-1228 MIMAT0024229 Gorilla gorilla miR-1228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>ggo-miR-491 MIMAT0024196 Gorilla gorilla miR-491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>nta-miR482b-5p MIMAT0023604 Nicotiana tabacum miR482b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>stu-miR482e-5p MIMAT0031163 Solanum tuberosum miR482e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>stu-miR482b-5p MIMAT0031160 Solanum tuberosum miR482b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>tca-miR-6009-3p MIMAT0023560 Tribolium castaneum miR-6009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>hco-miR-5962 MIMAT0023466 Haemonchus contortus miR-5962
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>hco-miR-5927 MIMAT0023408 Haemonchus contortus miR-5927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtggg 6
||||||
Sbjct: 6 agtggg 1
>asu-miR-5356a-5p MIMAT0021572 Ascaris suum miR-5356a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 8 gtgggc 3
>bdi-miR5166 MIMAT0020708 Brachypodium distachyon miR5166
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 7 gtgggc 2
>ssc-miR-491 MIMAT0020592 Sus scrofa miR-491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>hsa-miR-4745-5p MIMAT0019878 Homo sapiens miR-4745-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>hsa-miR-4727-3p MIMAT0019848 Homo sapiens miR-4727-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>pma-miR-4626 MIMAT0019660 Petromyzon marinus miR-4626
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>hsa-miR-4481 MIMAT0019015 Homo sapiens miR-4481
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>csi-miR482a-5p MIMAT0018479 Citrus sinensis miR482a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>gma-miR394b-3p MIMAT0018336 Glycine max miR394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>hsa-miR-3620-5p MIMAT0022967 Homo sapiens miR-3620-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>hsa-miR-4286 MIMAT0016916 Homo sapiens miR-4286
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtggg 6
||||||
Sbjct: 8 agtggg 3
>hsa-miR-4265 MIMAT0016891 Homo sapiens miR-4265
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>hsa-miR-4322 MIMAT0016873 Homo sapiens miR-4322
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>hsa-miR-4296 MIMAT0016845 Homo sapiens miR-4296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>cin-miR-4165-3p MIMAT0016773 Ciona intestinalis miR-4165-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>cin-miR-182-3p MIMAT0016412 Ciona intestinalis miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>rno-miR-702-3p MIMAT0017885 Rattus norvegicus miR-702-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 7 gtgggc 2
>ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>ppy-miR-491-5p MIMAT0015911 Pongo pygmaeus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>hsa-miR-3156-3p MIMAT0019209 Homo sapiens miR-3156-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtggg 6
||||||
Sbjct: 8 agtggg 3
>tgu-miR-2978 MIMAT0014488 Taeniopygia guttata miR-2978
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>eca-miR-541 MIMAT0013168 Equus caballus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>eca-miR-491-5p MIMAT0013116 Equus caballus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>bta-miR-541 MIMAT0009343 Bos taurus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>bta-miR-491 MIMAT0009332 Bos taurus miR-491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 8 gtgggc 3
>mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>mml-miR-491-5p MIMAT0006352 Macaca mulatta miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>gga-miR-1777 MIMAT0007688 Gallus gallus miR-1777
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>gga-miR-1669 MIMAT0007553 Gallus gallus miR-1669
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>gga-miR-1668-5p MIMAT0007551 Gallus gallus miR-1668-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>hsa-miR-1233-5p MIMAT0022943 Homo sapiens miR-1233-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>hsa-miR-1228-5p MIMAT0005582 Homo sapiens miR-1228-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>mmu-miR-702-3p MIMAT0003492 Mus musculus miR-702-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgggc 7
||||||
Sbjct: 7 gtgggc 2
>mmu-miR-491-5p MIMAT0003486 Mus musculus miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 1 gtgggc 6
>hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>hsa-miR-491-5p MIMAT0002807 Homo sapiens miR-491-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>zma-miR394b-3p MIMAT0015163 Zea mays miR394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>zma-miR394a-3p MIMAT0015162 Zea mays miR394a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>ath-miR394b-3p MIMAT0031907 Arabidopsis thaliana miR394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>rno-miR-194-3p MIMAT0017148 Rattus norvegicus miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>rno-miR-134-3p MIMAT0017125 Rattus norvegicus miR-134-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
>mmu-miR-194-2-3p MIMAT0017073 Mus musculus miR-194-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>hsa-miR-194-3p MIMAT0004671 Homo sapiens miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 3 agtggg 8
>dme-miR-279-5p MIMAT0020807 Drosophila melanogaster miR-279-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtggg 6
||||||
Sbjct: 1 agtggg 6
>mmu-miR-134-3p MIMAT0016985 Mus musculus miR-134-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggc 7
||||||
Sbjct: 3 gtgggc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 106
Number of extensions: 102
Number of successful extensions: 88
Number of sequences better than 100.0: 88
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 88
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
