BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-7-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus miR-rL1-... 16 6.9
eca-miR-9003 MIMAT0034543 Equus caballus miR-9003 14 27
mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p 14 27
mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica miR-7386k-5p 14 27
mmu-miR-3061-5p MIMAT0014828 Mus musculus miR-3061-5p 14 27
cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans miR-1832b-3p 14 27
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2 14 27
rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p 14 27
mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p 14 27
rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus miR-rL1-... 14 27
ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p 14 27
>rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus
miR-rL1-7-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agtgggcc 8
||||||||
Sbjct: 1 agtgggcc 8
>eca-miR-9003 MIMAT0034543 Equus caballus miR-9003
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgggc 7
|||||||
Sbjct: 7 agtgggc 1
>mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggcc 8
|||||||
Sbjct: 8 gtgggcc 2
>mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica
miR-7386k-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 2 gtgggcc 8
>mmu-miR-3061-5p MIMAT0014828 Mus musculus miR-3061-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggc 7
|||||||
Sbjct: 2 agtgggc 8
>cel-miR-1832b-3p MIMAT0011450 Caenorhabditis elegans
miR-1832b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggc 7
|||||||
Sbjct: 1 agtgggc 7
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggcc 8
|||||||
Sbjct: 8 gtgggcc 2
>rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 1 gtgggcc 7
>mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 2 gtgggcc 8
>rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus
miR-rL1-8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 2 gtgggcc 8
>ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggcc 8
|||||||
Sbjct: 1 gtgggcc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 150
Number of extensions: 138
Number of successful extensions: 117
Number of sequences better than 100.0: 11
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
