BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-11-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pxy-miR-279a MIMAT0033755 Plutella xylostella miR-279a 14 27
mml-miR-1180-5p MIMAT0028264 Macaca mulatta miR-1180-5p 14 27
hsa-miR-7114-3p MIMAT0028126 Homo sapiens miR-7114-3p 14 27
sma-miR-61-5p MIMAT0032138 Schistosoma mansoni miR-61-5p 14 27
nta-miR482b-5p MIMAT0023604 Nicotiana tabacum miR482b-5p 14 27
stu-miR482e-5p MIMAT0031163 Solanum tuberosum miR482e-5p 14 27
pma-miR-4626 MIMAT0019660 Petromyzon marinus miR-4626 14 27
hsa-miR-1180-5p MIMAT0026735 Homo sapiens miR-1180-5p 14 27
dme-miR-279-5p MIMAT0020807 Drosophila melanogaster miR-279-5p 14 27
>pxy-miR-279a MIMAT0033755 Plutella xylostella miR-279a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggt 7
|||||||
Sbjct: 1 agtgggt 7
>mml-miR-1180-5p MIMAT0028264 Macaca mulatta miR-1180-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggtc 8
|||||||
Sbjct: 8 gtgggtc 2
>hsa-miR-7114-3p MIMAT0028126 Homo sapiens miR-7114-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggtc 8
|||||||
Sbjct: 8 gtgggtc 2
>sma-miR-61-5p MIMAT0032138 Schistosoma mansoni miR-61-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gtgggtc 8
|||||||
Sbjct: 2 gtgggtc 8
>nta-miR482b-5p MIMAT0023604 Nicotiana tabacum miR482b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggt 7
|||||||
Sbjct: 1 agtgggt 7
>stu-miR482e-5p MIMAT0031163 Solanum tuberosum miR482e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggt 7
|||||||
Sbjct: 1 agtgggt 7
>pma-miR-4626 MIMAT0019660 Petromyzon marinus miR-4626
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggt 7
|||||||
Sbjct: 1 agtgggt 7
>hsa-miR-1180-5p MIMAT0026735 Homo sapiens miR-1180-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtgggtc 8
|||||||
Sbjct: 8 gtgggtc 2
>dme-miR-279-5p MIMAT0020807 Drosophila melanogaster miR-279-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgggt 7
|||||||
Sbjct: 1 agtgggt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 177
Number of extensions: 168
Number of successful extensions: 141
Number of sequences better than 100.0: 9
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
