BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv2-miR-h4-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdo-miR-7339-5p MIMAT0028686 Monodelphis domestica miR-7339-5p         14      20
api-miR-3048 MIMAT0014788 Acyrthosiphon pisum miR-3048                 14      20
hsv2-miR-H4-5p MIMAT0010203 Herpes Simplex miR-H4-5p                   14      20
efu-miR-9320 MIMAT0035010 Eptesicus fuscus miR-9320                    12      80
efu-miR-27b MIMAT0034900 Eptesicus fuscus miR-27b                      12      80
efu-miR-9230c MIMAT0034837 Eptesicus fuscus miR-9230c                  12      80
gra-miR8705 MIMAT0034091 Gossypium raimondii miR8705                   12      80
gra-miR8663a MIMAT0034001 Gossypium raimondii miR8663a                 12      80
ppc-miR-8274-3p MIMAT0033048 Pristionchus pacificus miR-8274-3p        12      80
ppc-miR-2238k-5p MIMAT0033037 Pristionchus pacificus miR-2238k-5p      12      80
ppc-miR-2238i-5p MIMAT0032940 Pristionchus pacificus miR-2238i-5p      12      80
ppc-miR-2238h-5p MIMAT0032930 Pristionchus pacificus miR-2238h-5p      12      80
ppc-miR-8231-5p MIMAT0032908 Pristionchus pacificus miR-8231-5p        12      80
ppc-miR-2238g-5p MIMAT0032894 Pristionchus pacificus miR-2238g-5p      12      80
ppc-miR-2238f-5p MIMAT0032856 Pristionchus pacificus miR-2238f-5p      12      80
prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus miR-7950b-5p       12      80
bdi-miR7743-3p MIMAT0030227 Brachypodium distachyon miR7743-3p         12      80
mtr-miR2669b MIMAT0029977 Medicago truncatula miR2669b                 12      80
mdo-miR-7307-5p MIMAT0028610 Monodelphis domestica miR-7307-5p         12      80
mdo-miR-7254-3p MIMAT0028475 Monodelphis domestica miR-7254-3p         12      80
mmu-miR-6948-5p MIMAT0027796 Mus musculus miR-6948-5p                  12      80
gga-miR-6546-3p MIMAT0025596 Gallus gallus miR-6546-3p                 12      80
mmu-miR-6378 MIMAT0025124 Mus musculus miR-6378                        12      80
rno-miR-6317 MIMAT0025054 Rattus norvegicus miR-6317                   12      80
hme-miR-6301-3p MIMAT0025005 Heliconius melpomene miR-6301-3p          12      80
nta-miR6161d MIMAT0024773 Nicotiana tabacum miR6161d                   12      80
nta-miR1446 MIMAT0024763 Nicotiana tabacum miR1446                     12      80
ggo-miR-887 MIMAT0024204 Gorilla gorilla miR-887                       12      80
cgr-miR-872-3p MIMAT0024006 Cricetulus griseus miR-872-3p              12      80
gma-miR5763c MIMAT0023192 Glycine max miR5763c                         12      80
gma-miR5763b MIMAT0023160 Glycine max miR5763b                         12      80
gma-miR5763a MIMAT0023159 Glycine max miR5763a                         12      80
tur-miR-124-2-5p MIMAT0026457 Tetranychus urticae miR-124-2-5p         12      80
cel-miR-5594-3p MIMAT0022310 Caenorhabditis elegans miR-5594-3p        12      80
osa-miR5538 MIMAT0022174 Oryza sativa miR5538                          12      80
asu-miR-5356b-5p MIMAT0021574 Ascaris suum miR-5356b-5p                12      80
hsa-miR-4539 MIMAT0019082 Homo sapiens miR-4539                        12      80
cin-miR-1502d-5p MIMAT0016493 Ciona intestinalis miR-1502d-5p          12      80
cin-miR-1502c-5p MIMAT0016491 Ciona intestinalis miR-1502c-5p          12      80
cin-miR-1502b-5p MIMAT0016489 Ciona intestinalis miR-1502b-5p          12      80
cin-miR-4002-5p MIMAT0016448 Ciona intestinalis miR-4002-5p            12      80
ppy-miR-887 MIMAT0016122 Pongo pygmaeus miR-887                        12      80
ghr-miR3476-5p MIMAT0015653 Gossypium hirsutum miR3476-5p              12      80
mmu-miR-3089-5p MIMAT0014899 Mus musculus miR-3089-5p                  12      80
osa-miR2874 MIMAT0013824 Oryza sativa miR2874                          12      80
eca-miR-345-3p MIMAT0013139 Equus caballus miR-345-3p                  12      80
mtr-miR2669a MIMAT0013476 Medicago truncatula miR2669a                 12      80
bta-miR-2411-3p MIMAT0011973 Bos taurus miR-2411-3p                    12      80
osa-miR396f-3p MIMAT0015292 Oryza sativa miR396f-3p                    12      80
ptr-miR-887 MIMAT0008330 Pan troglodytes miR-887                       12      80
cfa-miR-345 MIMAT0006710 Canis familiaris miR-345                      12      80
mml-miR-887 MIMAT0006526 Macaca mulatta miR-887                        12      80
mml-miR-556-5p MIMAT0006424 Macaca mulatta miR-556-5p                  12      80
odi-miR-1502 MIMAT0006062 Oikopleura dioica miR-1502                   12      80
rno-miR-872-3p MIMAT0005283 Rattus norvegicus miR-872-3p               12      80
hsa-miR-887-3p MIMAT0004951 Homo sapiens miR-887-3p                    12      80
mmu-miR-872-3p MIMAT0004935 Mus musculus miR-872-3p                    12      80
mdo-miR-124a-5p MIMAT0026660 Monodelphis domestica miR-124a-5p         12      80
bta-miR-345-3p MIMAT0012535 Bos taurus miR-345-3p                      12      80
mml-miR-124a-5p MIMAT0026585 Macaca mulatta miR-124a-5p                12      80
gga-miR-124a-5p MIMAT0026511 Gallus gallus miR-124a-5p                 12      80
mmu-miR-345-3p MIMAT0004656 Mus musculus miR-345-3p                    12      80
>mdo-miR-7339-5p MIMAT0028686 Monodelphis domestica miR-7339-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agttcac 7
         |||||||
Sbjct: 1 agttcac 7
>api-miR-3048 MIMAT0014788 Acyrthosiphon pisum miR-3048
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agttcac 7
         |||||||
Sbjct: 8 agttcac 2
>hsv2-miR-H4-5p MIMAT0010203 Herpes Simplex miR-H4-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agttcac 7
         |||||||
Sbjct: 2 agttcac 8
>efu-miR-9320 MIMAT0035010 Eptesicus fuscus miR-9320
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>efu-miR-27b MIMAT0034900 Eptesicus fuscus miR-27b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 1 gttcac 6
>efu-miR-9230c MIMAT0034837 Eptesicus fuscus miR-9230c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>gra-miR8705 MIMAT0034091 Gossypium raimondii miR8705
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 1 agttca 6
>gra-miR8663a MIMAT0034001 Gossypium raimondii miR8663a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>ppc-miR-8274-3p MIMAT0033048 Pristionchus pacificus miR-8274-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>ppc-miR-2238k-5p MIMAT0033037 Pristionchus pacificus
         miR-2238k-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>ppc-miR-2238i-5p MIMAT0032940 Pristionchus pacificus
         miR-2238i-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>ppc-miR-2238h-5p MIMAT0032930 Pristionchus pacificus
         miR-2238h-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>ppc-miR-8231-5p MIMAT0032908 Pristionchus pacificus miR-8231-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 8 gttcac 3
>ppc-miR-2238g-5p MIMAT0032894 Pristionchus pacificus
         miR-2238g-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>ppc-miR-2238f-5p MIMAT0032856 Pristionchus pacificus
         miR-2238f-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus
         miR-7950b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 1 gttcac 6
>bdi-miR7743-3p MIMAT0030227 Brachypodium distachyon miR7743-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>mtr-miR2669b MIMAT0029977 Medicago truncatula miR2669b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 3 agttca 8
>mdo-miR-7307-5p MIMAT0028610 Monodelphis domestica miR-7307-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 1 agttca 6
>mdo-miR-7254-3p MIMAT0028475 Monodelphis domestica miR-7254-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 3 agttca 8
>mmu-miR-6948-5p MIMAT0027796 Mus musculus miR-6948-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 1 agttca 6
>gga-miR-6546-3p MIMAT0025596 Gallus gallus miR-6546-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 3 agttca 8
>mmu-miR-6378 MIMAT0025124 Mus musculus miR-6378
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>rno-miR-6317 MIMAT0025054 Rattus norvegicus miR-6317
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 6 gttcac 1
>hme-miR-6301-3p MIMAT0025005 Heliconius melpomene miR-6301-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 3 agttca 8
>nta-miR6161d MIMAT0024773 Nicotiana tabacum miR6161d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>nta-miR1446 MIMAT0024763 Nicotiana tabacum miR1446
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>ggo-miR-887 MIMAT0024204 Gorilla gorilla miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 6 gttcac 1
>cgr-miR-872-3p MIMAT0024006 Cricetulus griseus miR-872-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>gma-miR5763c MIMAT0023192 Glycine max miR5763c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>gma-miR5763b MIMAT0023160 Glycine max miR5763b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>gma-miR5763a MIMAT0023159 Glycine max miR5763a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>tur-miR-124-2-5p MIMAT0026457 Tetranychus urticae miR-124-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>cel-miR-5594-3p MIMAT0022310 Caenorhabditis elegans miR-5594-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>osa-miR5538 MIMAT0022174 Oryza sativa miR5538
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>asu-miR-5356b-5p MIMAT0021574 Ascaris suum miR-5356b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>hsa-miR-4539 MIMAT0019082 Homo sapiens miR-4539
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>cin-miR-1502d-5p MIMAT0016493 Ciona intestinalis miR-1502d-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>cin-miR-1502c-5p MIMAT0016491 Ciona intestinalis miR-1502c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>cin-miR-1502b-5p MIMAT0016489 Ciona intestinalis miR-1502b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>cin-miR-4002-5p MIMAT0016448 Ciona intestinalis miR-4002-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>ppy-miR-887 MIMAT0016122 Pongo pygmaeus miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 6 gttcac 1
>ghr-miR3476-5p MIMAT0015653 Gossypium hirsutum miR3476-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>mmu-miR-3089-5p MIMAT0014899 Mus musculus miR-3089-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 3 agttca 8
>osa-miR2874 MIMAT0013824 Oryza sativa miR2874
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 8 gttcac 3
>eca-miR-345-3p MIMAT0013139 Equus caballus miR-345-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>mtr-miR2669a MIMAT0013476 Medicago truncatula miR2669a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 3 agttca 8
>bta-miR-2411-3p MIMAT0011973 Bos taurus miR-2411-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>osa-miR396f-3p MIMAT0015292 Oryza sativa miR396f-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agttca 6
         ||||||
Sbjct: 3 agttca 8
>ptr-miR-887 MIMAT0008330 Pan troglodytes miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 6 gttcac 1
>cfa-miR-345 MIMAT0006710 Canis familiaris miR-345
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>mml-miR-887 MIMAT0006526 Macaca mulatta miR-887
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 6 gttcac 1
>mml-miR-556-5p MIMAT0006424 Macaca mulatta miR-556-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>odi-miR-1502 MIMAT0006062 Oikopleura dioica miR-1502
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>rno-miR-872-3p MIMAT0005283 Rattus norvegicus miR-872-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>hsa-miR-887-3p MIMAT0004951 Homo sapiens miR-887-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 6 gttcac 1
>mmu-miR-872-3p MIMAT0004935 Mus musculus miR-872-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 6 agttca 1
>mdo-miR-124a-5p MIMAT0026660 Monodelphis domestica miR-124a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 3 gttcac 8
>bta-miR-345-3p MIMAT0012535 Bos taurus miR-345-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
>mml-miR-124a-5p MIMAT0026585 Macaca mulatta miR-124a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 1 gttcac 6
>gga-miR-124a-5p MIMAT0026511 Gallus gallus miR-124a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gttcac 7
         ||||||
Sbjct: 1 gttcac 6
>mmu-miR-345-3p MIMAT0004656 Mus musculus miR-345-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agttca 6
         ||||||
Sbjct: 8 agttca 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 84
Number of extensions: 81
Number of successful extensions: 62
Number of sequences better than 100.0: 62
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 62
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)