BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR36-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p 14 20
tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p 14 20
tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p 14 20
ssc-miR-382 MIMAT0017956 Sus scrofa miR-382 14 20
bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p 14 20
sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p 14 20
bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p 14 20
ata-miR5168-5p MIMAT0037130 Aegilops tauschii miR5168-5p 12 80
oha-miR-21-3p MIMAT0036825 Ophiophagus hannah miR-21-3p 12 80
chi-miR-382-5p MIMAT0036200 Capra hircus miR-382-5p 12 80
bra-miR9567-5p MIMAT0035693 Brassica rapa miR9567-5p 12 80
sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p 12 80
ppc-miR-8335-3p MIMAT0033215 Pristionchus pacificus miR-8335-3p 12 80
ssa-miR-338a-4-5p MIMAT0032617 Salmo salar miR-338a-4-5p 12 80
ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p 12 80
bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p 12 80
lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p 12 80
pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p 12 80
ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b 12 80
gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p 12 80
mdo-miR-7388a-5p MIMAT0028868 Monodelphis domestica miR-7388a-5p 12 80
mdo-miR-1805-5p MIMAT0028690 Monodelphis domestica miR-1805-5p 12 80
mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p 12 80
sbi-miR5568d-3p MIMAT0026423 Sorghum bicolor miR5568d-3p 12 80
bma-miR-5847 MIMAT0026345 Brugia malayi miR-5847 12 80
gga-miR-6548-5p MIMAT0025601 Gallus gallus miR-6548-5p 12 80
pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p 12 80
hme-miR-3327 MIMAT0024981 Heliconius melpomene miR-3327 12 80
bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p 12 80
cgr-miR-382 MIMAT0023947 Cricetulus griseus miR-382 12 80
ola-miR-338-5p MIMAT0022579 Oryzias latipes miR-338-5p 12 80
osa-miR5485 MIMAT0022118 Oryza sativa miR5485 12 80
aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b 12 80
aca-miR-1805-5p MIMAT0021807 Anolis carolinensis miR-1805-5p 12 80
mtr-miR5277 MIMAT0021316 Medicago truncatula miR5277 12 80
osa-miR5147 MIMAT0021092 Oryza sativa miR5147 12 80
hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p 12 80
oar-miR-382-5p MIMAT0019306 Ovis aries miR-382-5p 12 80
gma-miR4408 MIMAT0018327 Glycine max miR4408 12 80
gma-miR1520p MIMAT0018322 Glycine max miR1520p 12 80
gma-miR4364b MIMAT0018234 Glycine max miR4364b 12 80
cin-miR-4114-5p MIMAT0016704 Ciona intestinalis miR-4114-5p 12 80
cin-miR-4064-3p MIMAT0016617 Ciona intestinalis miR-4064-3p 12 80
cin-miR-4023-3p MIMAT0016538 Ciona intestinalis miR-4023-3p 12 80
gso-miR1510a MIMAT0016356 Glycine soja miR1510a 12 80
gso-miR1510b MIMAT0016355 Glycine soja miR1510b 12 80
ppy-miR-549 MIMAT0015996 Pongo pygmaeus miR-549 12 80
ppy-miR-382 MIMAT0015872 Pongo pygmaeus miR-382 12 80
aly-miR822-3p MIMAT0017600 Arabidopsis lyrata miR822-3p 12 80
bmo-miR-3327-5p MIMAT0015514 Bombyx mori miR-3327-5p 12 80
mmu-miR-669p-5p MIMAT0014889 Mus musculus miR-669p-5p 12 80
tgu-miR-21-3p MIMAT0014636 Taeniopygia guttata miR-21-3p 12 80
tgu-miR-1805-5p MIMAT0014620 Taeniopygia guttata miR-1805-5p 12 80
rlcv-miR-rL1-23-3p MIMAT0016946 Rhesus lymphocryptovirus miR-rL1... 12 80
eca-miR-382 MIMAT0013150 Equus caballus miR-382 12 80
bta-miR-2325c MIMAT0011934 Bos taurus miR-2325c 12 80
bta-miR-2325b MIMAT0011927 Bos taurus miR-2325b 12 80
ppc-miR-2256 MIMAT0011680 Pristionchus pacificus miR-2256 12 80
ebv-miR-BART21-3p MIMAT0010131 Epstein Barr miR-BART21-3p 12 80
gma-miR1510b-3p MIMAT0010082 Glycine max miR1510b-3p 12 80
mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p 12 80
spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus miR-2009 12 80
mmu-miR-669l-5p MIMAT0009418 Mus musculus miR-669l-5p 12 80
bta-miR-382 MIMAT0009308 Bos taurus miR-382 12 80
ptr-miR-549 MIMAT0008229 Pan troglodytes miR-549 12 80
ptr-miR-382 MIMAT0008134 Pan troglodytes miR-382 12 80
mml-miR-382-5p MIMAT0006311 Macaca mulatta miR-382-5p 12 80
gga-miR-1787 MIMAT0007699 Gallus gallus miR-1787 12 80
gga-miR-1814 MIMAT0007513 Gallus gallus miR-1814 12 80
gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p 12 80
mmu-miR-669f-5p MIMAT0017327 Mus musculus miR-669f-5p 12 80
rno-miR-196c-3p MIMAT0017299 Rattus norvegicus miR-196c-3p 12 80
mmu-miR-669c-5p MIMAT0003479 Mus musculus miR-669c-5p 12 80
mmu-miR-669a-5p MIMAT0003477 Mus musculus miR-669a-5p 12 80
hsa-miR-549a MIMAT0003333 Homo sapiens miR-549a 12 80
rno-miR-382-5p MIMAT0003201 Rattus norvegicus miR-382-5p 12 80
dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p 12 80
rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p 12 80
mmu-miR-382-5p MIMAT0000747 Mus musculus miR-382-5p 12 80
hsa-miR-382-5p MIMAT0000737 Homo sapiens miR-382-5p 12 80
>bbe-miR-34b-3p MIMAT0031672 Branchiostoma belcheri miR-34b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agttgtt 7
|||||||
Sbjct: 7 agttgtt 1
>tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agttgtt 7
|||||||
Sbjct: 1 agttgtt 7
>tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agttgtt 7
|||||||
Sbjct: 1 agttgtt 7
>ssc-miR-382 MIMAT0017956 Sus scrofa miR-382
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agttgtt 7
|||||||
Sbjct: 2 agttgtt 8
>bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agttgtt 7
|||||||
Sbjct: 1 agttgtt 7
>sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agttgtt 7
|||||||
Sbjct: 7 agttgtt 1
>bfl-miR-34b-3p MIMAT0010002 Branchiostoma floridae miR-34b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agttgtt 7
|||||||
Sbjct: 7 agttgtt 1
>ata-miR5168-5p MIMAT0037130 Aegilops tauschii miR5168-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 3 gttgtt 8
>oha-miR-21-3p MIMAT0036825 Ophiophagus hannah miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>chi-miR-382-5p MIMAT0036200 Capra hircus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>bra-miR9567-5p MIMAT0035693 Brassica rapa miR9567-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 8 gttgtt 3
>sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 8 gttgtt 3
>ppc-miR-8335-3p MIMAT0033215 Pristionchus pacificus miR-8335-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 1 gttgtt 6
>ssa-miR-338a-4-5p MIMAT0032617 Salmo salar miR-338a-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>bdi-miR7745-3p MIMAT0030231 Brachypodium distachyon miR7745-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 3 gttgtt 8
>lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>mdo-miR-7388a-5p MIMAT0028868 Monodelphis domestica
miR-7388a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>mdo-miR-1805-5p MIMAT0028690 Monodelphis domestica miR-1805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>sbi-miR5568d-3p MIMAT0026423 Sorghum bicolor miR5568d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>bma-miR-5847 MIMAT0026345 Brugia malayi miR-5847
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>gga-miR-6548-5p MIMAT0025601 Gallus gallus miR-6548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>hme-miR-3327 MIMAT0024981 Heliconius melpomene miR-3327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>cgr-miR-382 MIMAT0023947 Cricetulus griseus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>ola-miR-338-5p MIMAT0022579 Oryzias latipes miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>osa-miR5485 MIMAT0022118 Oryza sativa miR5485
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agttgt 6
||||||
Sbjct: 8 agttgt 3
>aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agttgt 6
||||||
Sbjct: 6 agttgt 1
>aca-miR-1805-5p MIMAT0021807 Anolis carolinensis miR-1805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>mtr-miR5277 MIMAT0021316 Medicago truncatula miR5277
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 3 gttgtt 8
>osa-miR5147 MIMAT0021092 Oryza sativa miR5147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agttgt 6
||||||
Sbjct: 6 agttgt 1
>hsa-miR-3529-3p MIMAT0022741 Homo sapiens miR-3529-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>oar-miR-382-5p MIMAT0019306 Ovis aries miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>gma-miR4408 MIMAT0018327 Glycine max miR4408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 7 gttgtt 2
>gma-miR1520p MIMAT0018322 Glycine max miR1520p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 3 gttgtt 8
>gma-miR4364b MIMAT0018234 Glycine max miR4364b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 7 gttgtt 2
>cin-miR-4114-5p MIMAT0016704 Ciona intestinalis miR-4114-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>cin-miR-4064-3p MIMAT0016617 Ciona intestinalis miR-4064-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>cin-miR-4023-3p MIMAT0016538 Ciona intestinalis miR-4023-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>gso-miR1510a MIMAT0016356 Glycine soja miR1510a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 2 gttgtt 7
>gso-miR1510b MIMAT0016355 Glycine soja miR1510b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 2 gttgtt 7
>ppy-miR-549 MIMAT0015996 Pongo pygmaeus miR-549
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agttgt 6
||||||
Sbjct: 8 agttgt 3
>ppy-miR-382 MIMAT0015872 Pongo pygmaeus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>aly-miR822-3p MIMAT0017600 Arabidopsis lyrata miR822-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 8 gttgtt 3
>bmo-miR-3327-5p MIMAT0015514 Bombyx mori miR-3327-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>mmu-miR-669p-5p MIMAT0014889 Mus musculus miR-669p-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>tgu-miR-21-3p MIMAT0014636 Taeniopygia guttata miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 6 gttgtt 1
>tgu-miR-1805-5p MIMAT0014620 Taeniopygia guttata miR-1805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>rlcv-miR-rL1-23-3p MIMAT0016946 Rhesus lymphocryptovirus
miR-rL1-23-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>eca-miR-382 MIMAT0013150 Equus caballus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>bta-miR-2325c MIMAT0011934 Bos taurus miR-2325c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 2 gttgtt 7
>bta-miR-2325b MIMAT0011927 Bos taurus miR-2325b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 3 gttgtt 8
>ppc-miR-2256 MIMAT0011680 Pristionchus pacificus miR-2256
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 2 gttgtt 7
>ebv-miR-BART21-3p MIMAT0010131 Epstein Barr miR-BART21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>gma-miR1510b-3p MIMAT0010082 Glycine max miR1510b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 2 gttgtt 7
>mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus
miR-2009
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>mmu-miR-669l-5p MIMAT0009418 Mus musculus miR-669l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>bta-miR-382 MIMAT0009308 Bos taurus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>ptr-miR-549 MIMAT0008229 Pan troglodytes miR-549
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agttgt 6
||||||
Sbjct: 8 agttgt 3
>ptr-miR-382 MIMAT0008134 Pan troglodytes miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>mml-miR-382-5p MIMAT0006311 Macaca mulatta miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>gga-miR-1787 MIMAT0007699 Gallus gallus miR-1787
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 2 gttgtt 7
>gga-miR-1814 MIMAT0007513 Gallus gallus miR-1814
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 3 gttgtt 8
>gma-miR1510a-3p MIMAT0007368 Glycine max miR1510a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gttgtt 7
||||||
Sbjct: 3 gttgtt 8
>mmu-miR-669f-5p MIMAT0017327 Mus musculus miR-669f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>rno-miR-196c-3p MIMAT0017299 Rattus norvegicus miR-196c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gttgtt 7
||||||
Sbjct: 8 gttgtt 3
>mmu-miR-669c-5p MIMAT0003479 Mus musculus miR-669c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>mmu-miR-669a-5p MIMAT0003477 Mus musculus miR-669a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 1 agttgt 6
>hsa-miR-549a MIMAT0003333 Homo sapiens miR-549a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agttgt 6
||||||
Sbjct: 8 agttgt 3
>rno-miR-382-5p MIMAT0003201 Rattus norvegicus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>mmu-miR-382-5p MIMAT0000747 Mus musculus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
>hsa-miR-382-5p MIMAT0000737 Homo sapiens miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agttgt 6
||||||
Sbjct: 3 agttgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 104
Number of extensions: 97
Number of successful extensions: 80
Number of sequences better than 100.0: 80
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 80
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
