BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s25
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-656 MIMAT0036556 Tupaia chinensis miR-656 14 27
chi-miR-656 MIMAT0036283 Capra hircus miR-656 14 27
bra-miR9560b-3p MIMAT0035676 Brassica rapa miR9560b-3p 14 27
bra-miR9560a-3p MIMAT0035674 Brassica rapa miR9560a-3p 14 27
gra-miR8643b MIMAT0034000 Gossypium raimondii miR8643b 14 27
gra-miR8643a MIMAT0033999 Gossypium raimondii miR8643a 14 27
bma-miR-60 MIMAT0031759 Brugia malayi miR-60 14 27
stu-miR7994b-3p MIMAT0030880 Solanum tuberosum miR7994b-3p 14 27
stu-miR7994a MIMAT0030879 Solanum tuberosum miR7994a 14 27
bdi-miR7714-3p MIMAT0030151 Brachypodium distachyon miR7714-3p 14 27
ddi-miR-7131c-3p MIMAT0028142 Dictyostelium discoideum miR-7131c-3p 14 27
ddi-miR-7131a-3p MIMAT0028138 Dictyostelium discoideum miR-7131a-3p 14 27
mse-miR-6096 MIMAT0024504 Manduca sexta miR-6096 14 27
mse-miR-2763 MIMAT0024489 Manduca sexta miR-2763 14 27
ggo-miR-656 MIMAT0024183 Gorilla gorilla miR-656 14 27
hsa-miR-5692b MIMAT0022497 Homo sapiens miR-5692b 14 27
hsa-miR-5692c MIMAT0022476 Homo sapiens miR-5692c 14 27
mtr-miR5208d MIMAT0021315 Medicago truncatula miR5208d 14 27
hsa-miR-4795-3p MIMAT0019969 Homo sapiens miR-4795-3p 14 27
gma-miR4402 MIMAT0018320 Glycine max miR4402 14 27
ppy-miR-656 MIMAT0016090 Pongo pygmaeus miR-656 14 27
nvi-miR-3477 MIMAT0015706 Nasonia vitripennis miR-3477 14 27
eca-miR-656 MIMAT0013172 Equus caballus miR-656 14 27
bmo-miR-2771-3p MIMAT0013655 Bombyx mori miR-2771-3p 14 27
bta-miR-656 MIMAT0009361 Bos taurus miR-656 14 27
ptr-miR-656 MIMAT0008305 Pan troglodytes miR-656 14 27
mml-miR-656-3p MIMAT0006497 Macaca mulatta miR-656-3p 14 27
hsa-miR-656-3p MIMAT0003332 Homo sapiens miR-656-3p 14 27
>tch-miR-656 MIMAT0036556 Tupaia chinensis miR-656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>chi-miR-656 MIMAT0036283 Capra hircus miR-656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>bra-miR9560b-3p MIMAT0035676 Brassica rapa miR9560b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 8 taatatg 2
>bra-miR9560a-3p MIMAT0035674 Brassica rapa miR9560a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 8 taatatg 2
>gra-miR8643b MIMAT0034000 Gossypium raimondii miR8643b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 8 taatatg 2
>gra-miR8643a MIMAT0033999 Gossypium raimondii miR8643a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 8 taatatg 2
>bma-miR-60 MIMAT0031759 Brugia malayi miR-60
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 7 ataatat 1
>stu-miR7994b-3p MIMAT0030880 Solanum tuberosum miR7994b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 7 ataatat 1
>stu-miR7994a MIMAT0030879 Solanum tuberosum miR7994a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 7 ataatat 1
>bdi-miR7714-3p MIMAT0030151 Brachypodium distachyon miR7714-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taatatg 8
|||||||
Sbjct: 2 taatatg 8
>ddi-miR-7131c-3p MIMAT0028142 Dictyostelium discoideum
miR-7131c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 7 taatatg 1
>ddi-miR-7131a-3p MIMAT0028138 Dictyostelium discoideum
miR-7131a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 7 taatatg 1
>mse-miR-6096 MIMAT0024504 Manduca sexta miR-6096
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>mse-miR-2763 MIMAT0024489 Manduca sexta miR-2763
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 7 ataatat 1
>ggo-miR-656 MIMAT0024183 Gorilla gorilla miR-656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>hsa-miR-5692b MIMAT0022497 Homo sapiens miR-5692b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ataatat 7
|||||||
Sbjct: 2 ataatat 8
>hsa-miR-5692c MIMAT0022476 Homo sapiens miR-5692c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ataatat 7
|||||||
Sbjct: 2 ataatat 8
>mtr-miR5208d MIMAT0021315 Medicago truncatula miR5208d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 7 taatatg 1
>hsa-miR-4795-3p MIMAT0019969 Homo sapiens miR-4795-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 7 ataatat 1
>gma-miR4402 MIMAT0018320 Glycine max miR4402
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 8 taatatg 2
>ppy-miR-656 MIMAT0016090 Pongo pygmaeus miR-656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>nvi-miR-3477 MIMAT0015706 Nasonia vitripennis miR-3477
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taatatg 8
|||||||
Sbjct: 7 taatatg 1
>eca-miR-656 MIMAT0013172 Equus caballus miR-656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>bmo-miR-2771-3p MIMAT0013655 Bombyx mori miR-2771-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 7 ataatat 1
>bta-miR-656 MIMAT0009361 Bos taurus miR-656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>ptr-miR-656 MIMAT0008305 Pan troglodytes miR-656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>mml-miR-656-3p MIMAT0006497 Macaca mulatta miR-656-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
>hsa-miR-656-3p MIMAT0003332 Homo sapiens miR-656-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataatat 7
|||||||
Sbjct: 8 ataatat 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 186
Number of extensions: 158
Number of successful extensions: 125
Number of sequences better than 100.0: 28
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
