BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hhv6b-miR-ro6-4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hhv6b-miR-Ro6-4-3p MIMAT0026463 Human herpesvirus miR-Ro6-4-3p 16 6.9
ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p 14 27
hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088 14 27
stu-miR7984b-5p MIMAT0030853 Solanum tuberosum miR7984b-5p 14 27
stu-miR7984a MIMAT0030852 Solanum tuberosum miR7984a 14 27
ppy-miR-4798 MIMAT0024374 Pongo pygmaeus miR-4798 14 27
hsa-miR-4798-5p MIMAT0019974 Homo sapiens miR-4798-5p 14 27
bmo-miR-3411 MIMAT0015617 Bombyx mori miR-3411 14 27
bmo-miR-2774b MIMAT0013661 Bombyx mori miR-2774b 14 27
mcmv-miR-M23-1-5p MIMAT0005542 Mouse cytomegalovirus miR-M23-1-5p 14 27
>hhv6b-miR-Ro6-4-3p MIMAT0026463 Human herpesvirus miR-Ro6-4-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ataccgag 8
||||||||
Sbjct: 1 ataccgag 8
>ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taccgag 8
|||||||
Sbjct: 1 taccgag 7
>hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taccgag 8
|||||||
Sbjct: 8 taccgag 2
>stu-miR7984b-5p MIMAT0030853 Solanum tuberosum miR7984b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ataccga 7
|||||||
Sbjct: 1 ataccga 7
>stu-miR7984a MIMAT0030852 Solanum tuberosum miR7984a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ataccga 7
|||||||
Sbjct: 1 ataccga 7
>ppy-miR-4798 MIMAT0024374 Pongo pygmaeus miR-4798
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataccga 7
|||||||
Sbjct: 8 ataccga 2
>hsa-miR-4798-5p MIMAT0019974 Homo sapiens miR-4798-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataccga 7
|||||||
Sbjct: 8 ataccga 2
>bmo-miR-3411 MIMAT0015617 Bombyx mori miR-3411
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ataccga 7
|||||||
Sbjct: 7 ataccga 1
>bmo-miR-2774b MIMAT0013661 Bombyx mori miR-2774b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taccgag 8
|||||||
Sbjct: 7 taccgag 1
>mcmv-miR-M23-1-5p MIMAT0005542 Mouse cytomegalovirus
miR-M23-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taccgag 8
|||||||
Sbjct: 7 taccgag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 91
Number of successful extensions: 73
Number of sequences better than 100.0: 10
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
