BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR5-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9438 MIMAT0035399 Nematostella vectensis miR-9438 14 20
gra-miR8711 MIMAT0034099 Gossypium raimondii miR8711 14 20
cin-miR-3575-3p MIMAT0016395 Ciona intestinalis miR-3575-3p 14 20
dme-miR-9388-3p MIMAT0035239 Drosophila melanogaster miR-9388-3p 12 80
gra-miR8657b MIMAT0034246 Gossypium raimondii miR8657b 12 80
gra-miR8657e MIMAT0034025 Gossypium raimondii miR8657e 12 80
gra-miR8657d MIMAT0034024 Gossypium raimondii miR8657d 12 80
gra-miR8657c MIMAT0034023 Gossypium raimondii miR8657c 12 80
gra-miR8657a MIMAT0034022 Gossypium raimondii miR8657a 12 80
gra-miR5741 MIMAT0034009 Gossypium raimondii miR5741 12 80
bbe-miR-4877-3p MIMAT0031700 Branchiostoma belcheri miR-4877-3p 12 80
hsa-miR-8084 MIMAT0031011 Homo sapiens miR-8084 12 80
stu-miR8051-5p MIMAT0030978 Solanum tuberosum miR8051-5p 12 80
hhi-miR-728 MIMAT0030364 Hippoglossus hippoglossus miR-728 12 80
bdi-miR7710-5p MIMAT0030137 Brachypodium distachyon miR7710-5p 12 80
ipu-miR-728 MIMAT0029523 Ictalurus punctatus miR-728 12 80
mdo-miR-1-2-5p MIMAT0031035 Monodelphis domestica miR-1-2-5p 12 80
osa-miR6256 MIMAT0024879 Oryza sativa miR6256 12 80
hbr-miR6169 MIMAT0024788 Hevea brasiliensis miR6169 12 80
hco-miR-5975 MIMAT0023483 Haemonchus contortus miR-5975 12 80
hco-miR-5968 MIMAT0023475 Haemonchus contortus miR-5968 12 80
ssp-miR1128 MIMAT0020289 Saccharum sp. miR1128 12 80
dme-miR-4917-3p MIMAT0020511 Drosophila melanogaster miR-4917-3p 12 80
xbo-miR-2012 MIMAT0020123 Xenoturbella bocki miR-2012 12 80
sko-miR-4842 MIMAT0020062 Saccoglossus kowalevskii miR-4842 12 80
mmu-miR-3962 MIMAT0019340 Mus musculus miR-3962 12 80
vvi-miR3624-5p MIMAT0018011 Vitis vinifera miR3624-5p 12 80
rno-miR-3586-3p MIMAT0017881 Rattus norvegicus miR-3586-3p 12 80
rno-miR-3559-3p MIMAT0017828 Rattus norvegicus miR-3559-3p 12 80
bmo-miR-3366 MIMAT0015552 Bombyx mori miR-3366 12 80
bmo-miR-3355 MIMAT0015541 Bombyx mori miR-3355 12 80
bmo-miR-3229 MIMAT0015411 Bombyx mori miR-3229 12 80
bmo-miR-3213-5p MIMAT0015392 Bombyx mori miR-3213-5p 12 80
dps-miR-2570-5p MIMAT0012410 Drosophila pseudoobscura miR-2570-5p 12 80
bta-miR-2288 MIMAT0011795 Bos taurus miR-2288 12 80
dme-miR-2283-3p MIMAT0020909 Drosophila melanogaster miR-2283-3p 12 80
osa-miR1864 MIMAT0007814 Oryza sativa miR1864 12 80
tae-miR1128 MIMAT0005363 Triticum aestivum miR1128 12 80
dre-miR-728 MIMAT0003757 Danio rerio miR-728 12 80
ptc-miR480 MIMAT0002096 Populus trichocarpa miR480 12 80
>nve-miR-9438 MIMAT0035399 Nematostella vectensis miR-9438
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atactac 7
|||||||
Sbjct: 1 atactac 7
>gra-miR8711 MIMAT0034099 Gossypium raimondii miR8711
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atactac 7
|||||||
Sbjct: 1 atactac 7
>cin-miR-3575-3p MIMAT0016395 Ciona intestinalis miR-3575-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atactac 7
|||||||
Sbjct: 2 atactac 8
>dme-miR-9388-3p MIMAT0035239 Drosophila melanogaster
miR-9388-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 7 tactac 2
>gra-miR8657b MIMAT0034246 Gossypium raimondii miR8657b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 7 tactac 2
>gra-miR8657e MIMAT0034025 Gossypium raimondii miR8657e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 7 tactac 2
>gra-miR8657d MIMAT0034024 Gossypium raimondii miR8657d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 7 tactac 2
>gra-miR8657c MIMAT0034023 Gossypium raimondii miR8657c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 7 tactac 2
>gra-miR8657a MIMAT0034022 Gossypium raimondii miR8657a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 7 tactac 2
>gra-miR5741 MIMAT0034009 Gossypium raimondii miR5741
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>bbe-miR-4877-3p MIMAT0031700 Branchiostoma belcheri miR-4877-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 8 tactac 3
>hsa-miR-8084 MIMAT0031011 Homo sapiens miR-8084
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 3 atacta 8
>stu-miR8051-5p MIMAT0030978 Solanum tuberosum miR8051-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>hhi-miR-728 MIMAT0030364 Hippoglossus hippoglossus miR-728
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 1 atacta 6
>bdi-miR7710-5p MIMAT0030137 Brachypodium distachyon miR7710-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tactac 7
||||||
Sbjct: 1 tactac 6
>ipu-miR-728 MIMAT0029523 Ictalurus punctatus miR-728
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 1 atacta 6
>mdo-miR-1-2-5p MIMAT0031035 Monodelphis domestica miR-1-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 3 atacta 8
>osa-miR6256 MIMAT0024879 Oryza sativa miR6256
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 6 tactac 1
>hbr-miR6169 MIMAT0024788 Hevea brasiliensis miR6169
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>hco-miR-5975 MIMAT0023483 Haemonchus contortus miR-5975
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 8 tactac 3
>hco-miR-5968 MIMAT0023475 Haemonchus contortus miR-5968
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 3 atacta 8
>ssp-miR1128 MIMAT0020289 Saccharum sp. miR1128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tactac 7
||||||
Sbjct: 1 tactac 6
>dme-miR-4917-3p MIMAT0020511 Drosophila melanogaster
miR-4917-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tactac 7
||||||
Sbjct: 1 tactac 6
>xbo-miR-2012 MIMAT0020123 Xenoturbella bocki miR-2012
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>sko-miR-4842 MIMAT0020062 Saccoglossus kowalevskii miR-4842
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>mmu-miR-3962 MIMAT0019340 Mus musculus miR-3962
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 8 tactac 3
>vvi-miR3624-5p MIMAT0018011 Vitis vinifera miR3624-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>rno-miR-3586-3p MIMAT0017881 Rattus norvegicus miR-3586-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 1 atacta 6
>rno-miR-3559-3p MIMAT0017828 Rattus norvegicus miR-3559-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 8 tactac 3
>bmo-miR-3366 MIMAT0015552 Bombyx mori miR-3366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>bmo-miR-3355 MIMAT0015541 Bombyx mori miR-3355
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 3 atacta 8
>bmo-miR-3229 MIMAT0015411 Bombyx mori miR-3229
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 8 tactac 3
>bmo-miR-3213-5p MIMAT0015392 Bombyx mori miR-3213-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tactac 7
||||||
Sbjct: 1 tactac 6
>dps-miR-2570-5p MIMAT0012410 Drosophila pseudoobscura
miR-2570-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>bta-miR-2288 MIMAT0011795 Bos taurus miR-2288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 8 tactac 3
>dme-miR-2283-3p MIMAT0020909 Drosophila melanogaster
miR-2283-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atacta 6
||||||
Sbjct: 6 atacta 1
>osa-miR1864 MIMAT0007814 Oryza sativa miR1864
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tactac 7
||||||
Sbjct: 8 tactac 3
>tae-miR1128 MIMAT0005363 Triticum aestivum miR1128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tactac 7
||||||
Sbjct: 1 tactac 6
>dre-miR-728 MIMAT0003757 Danio rerio miR-728
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atacta 6
||||||
Sbjct: 1 atacta 6
>ptc-miR480 MIMAT0002096 Populus trichocarpa miR480
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tactac 7
||||||
Sbjct: 3 tactac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 48
Number of extensions: 45
Number of successful extensions: 40
Number of sequences better than 100.0: 40
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 40
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
