BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-7
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9429-3p MIMAT0035389 Nematostella vectensis miR-9429-3p 12 80
gsa-miR-277b-5p MIMAT0035310 Gyrodactylus salaris miR-277b-5p 12 80
pxy-miR-184 MIMAT0033727 Plutella xylostella miR-184 12 80
ath-miR8169 MIMAT0032767 Arabidopsis thaliana miR8169 12 80
bdi-miR7786-5p MIMAT0030328 Brachypodium distachyon miR7786-5p 12 80
bdi-miR7770-3p MIMAT0030291 Brachypodium distachyon miR7770-3p 12 80
bdi-miR7746-5p MIMAT0030232 Brachypodium distachyon miR7746-5p 12 80
hsa-miR-6863 MIMAT0027627 Homo sapiens miR-6863 12 80
pgi-miR6136a.1 MIMAT0027253 Panax ginseng miR6136a.1 12 80
mtr-miR5561-3p MIMAT0022228 Medicago truncatula miR5561-3p 12 80
sja-miR-3498 MIMAT0016307 Schistosoma japonicum miR-3498 12 80
sja-miR-3486-3p MIMAT0016293 Schistosoma japonicum miR-3486-3p 12 80
mmu-miR-3108-3p MIMAT0014948 Mus musculus miR-3108-3p 12 80
dps-miR-2553-5p MIMAT0012366 Drosophila pseudoobscura miR-2553-5p 12 80
rno-miR-463-3p MIMAT0005317 Rattus norvegicus miR-463-3p 12 80
mmu-miR-463-3p MIMAT0004758 Mus musculus miR-463-3p 12 80
>nve-miR-9429-3p MIMAT0035389 Nematostella vectensis miR-9429-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagacg 7
||||||
Sbjct: 8 tagacg 3
>gsa-miR-277b-5p MIMAT0035310 Gyrodactylus salaris miR-277b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagac 6
||||||
Sbjct: 1 atagac 6
>pxy-miR-184 MIMAT0033727 Plutella xylostella miR-184
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagacg 7
||||||
Sbjct: 1 tagacg 6
>ath-miR8169 MIMAT0032767 Arabidopsis thaliana miR8169
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagac 6
||||||
Sbjct: 1 atagac 6
>bdi-miR7786-5p MIMAT0030328 Brachypodium distachyon miR7786-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atagac 6
||||||
Sbjct: 6 atagac 1
>bdi-miR7770-3p MIMAT0030291 Brachypodium distachyon miR7770-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagacg 7
||||||
Sbjct: 3 tagacg 8
>bdi-miR7746-5p MIMAT0030232 Brachypodium distachyon miR7746-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagac 6
||||||
Sbjct: 1 atagac 6
>hsa-miR-6863 MIMAT0027627 Homo sapiens miR-6863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagacg 7
||||||
Sbjct: 1 tagacg 6
>pgi-miR6136a.1 MIMAT0027253 Panax ginseng miR6136a.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagacg 7
||||||
Sbjct: 1 tagacg 6
>mtr-miR5561-3p MIMAT0022228 Medicago truncatula miR5561-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atagac 6
||||||
Sbjct: 6 atagac 1
>sja-miR-3498 MIMAT0016307 Schistosoma japonicum miR-3498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagacg 7
||||||
Sbjct: 1 tagacg 6
>sja-miR-3486-3p MIMAT0016293 Schistosoma japonicum miR-3486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atagac 6
||||||
Sbjct: 8 atagac 3
>mmu-miR-3108-3p MIMAT0014948 Mus musculus miR-3108-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagacg 7
||||||
Sbjct: 6 tagacg 1
>dps-miR-2553-5p MIMAT0012366 Drosophila pseudoobscura
miR-2553-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagacg 7
||||||
Sbjct: 8 tagacg 3
>rno-miR-463-3p MIMAT0005317 Rattus norvegicus miR-463-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagac 6
||||||
Sbjct: 3 atagac 8
>mmu-miR-463-3p MIMAT0004758 Mus musculus miR-463-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagac 6
||||||
Sbjct: 3 atagac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 23
Number of extensions: 23
Number of successful extensions: 16
Number of sequences better than 100.0: 16
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
