BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-19-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577 14 20
rlcv-miR-rL1-19-5p MIMAT0016942 Rhesus lymphocryptovirus miR-rL1... 14 20
mmu-miR-701-3p MIMAT0017257 Mus musculus miR-701-3p 14 20
ata-miR5200-3p MIMAT0037139 Aegilops tauschii miR5200-3p 12 80
tae-miR5200 MIMAT0037000 Triticum aestivum miR5200 12 80
bdi-miR5200b-3p MIMAT0035547 Brachypodium distachyon miR5200b-3p 12 80
bdi-miR5200a-3p MIMAT0035545 Brachypodium distachyon miR5200a-3p 12 80
bdi-miR9492 MIMAT0035501 Brachypodium distachyon miR9492 12 80
gra-miR7484f MIMAT0034157 Gossypium raimondii miR7484f 12 80
pxy-miR-8535-3p MIMAT0033784 Plutella xylostella miR-8535-3p 12 80
pxy-miR-8491 MIMAT0033699 Plutella xylostella miR-8491 12 80
sma-miR-8430-5p MIMAT0033564 Schistosoma mansoni miR-8430-5p 12 80
ppc-miR-8280-3p MIMAT0033062 Pristionchus pacificus miR-8280-3p 12 80
ssa-miR-146b-3p MIMAT0032375 Salmo salar miR-146b-3p 12 80
ssa-miR-146a-3-3p MIMAT0032373 Salmo salar miR-146a-3-3p 12 80
ssa-miR-146a-3p MIMAT0032372 Salmo salar miR-146a-3p 12 80
bdi-miR7764-3p MIMAT0030275 Brachypodium distachyon miR7764-3p 12 80
bdi-miR5163b-3p MIMAT0030098 Brachypodium distachyon miR5163b-3p 12 80
cbn-miR-7631 MIMAT0029673 Caenorhabditis brenneri miR-7631 12 80
mdo-miR-7251-3p MIMAT0028469 Monodelphis domestica miR-7251-3p 12 80
sbi-miR5568e-3p MIMAT0026439 Sorghum bicolor miR5568e-3p 12 80
bdi-miR5200c MIMAT0020757 Brachypodium distachyon miR5200c 12 80
sko-miR-4844 MIMAT0020064 Saccoglossus kowalevskii miR-4844 12 80
csi-miR3951 MIMAT0018492 Citrus sinensis miR3951 12 80
far-miR1122 MIMAT0018366 Festuca arundinacea miR1122 12 80
hsa-miR-3935 MIMAT0018350 Homo sapiens miR-3935 12 80
ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577 12 80
bmo-miR-3399 MIMAT0015603 Bombyx mori miR-3399 12 80
api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046 12 80
bmo-miR-2770-5p MIMAT0013651 Bombyx mori miR-2770-5p 12 80
bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122 12 80
ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577 12 80
mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p 12 80
gma-miR1528 MIMAT0007390 Glycine max miR1528 12 80
tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a 12 80
dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p 12 80
mmu-miR-878-5p MIMAT0004932 Mus musculus miR-878-5p 12 80
hsa-miR-577 MIMAT0003242 Homo sapiens miR-577 12 80
>ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atagata 7
|||||||
Sbjct: 1 atagata 7
>rlcv-miR-rL1-19-5p MIMAT0016942 Rhesus lymphocryptovirus
miR-rL1-19-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atagata 7
|||||||
Sbjct: 2 atagata 8
>mmu-miR-701-3p MIMAT0017257 Mus musculus miR-701-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atagata 7
|||||||
Sbjct: 7 atagata 1
>ata-miR5200-3p MIMAT0037139 Aegilops tauschii miR5200-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>tae-miR5200 MIMAT0037000 Triticum aestivum miR5200
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>bdi-miR5200b-3p MIMAT0035547 Brachypodium distachyon
miR5200b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>bdi-miR5200a-3p MIMAT0035545 Brachypodium distachyon
miR5200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>bdi-miR9492 MIMAT0035501 Brachypodium distachyon miR9492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagata 7
||||||
Sbjct: 6 tagata 1
>gra-miR7484f MIMAT0034157 Gossypium raimondii miR7484f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagata 7
||||||
Sbjct: 6 tagata 1
>pxy-miR-8535-3p MIMAT0033784 Plutella xylostella miR-8535-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>pxy-miR-8491 MIMAT0033699 Plutella xylostella miR-8491
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>sma-miR-8430-5p MIMAT0033564 Schistosoma mansoni miR-8430-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagata 7
||||||
Sbjct: 6 tagata 1
>ppc-miR-8280-3p MIMAT0033062 Pristionchus pacificus miR-8280-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atagat 6
||||||
Sbjct: 8 atagat 3
>ssa-miR-146b-3p MIMAT0032375 Salmo salar miR-146b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atagat 6
||||||
Sbjct: 6 atagat 1
>ssa-miR-146a-3-3p MIMAT0032373 Salmo salar miR-146a-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atagat 6
||||||
Sbjct: 6 atagat 1
>ssa-miR-146a-3p MIMAT0032372 Salmo salar miR-146a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atagat 6
||||||
Sbjct: 6 atagat 1
>bdi-miR7764-3p MIMAT0030275 Brachypodium distachyon miR7764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagat 6
||||||
Sbjct: 3 atagat 8
>bdi-miR5163b-3p MIMAT0030098 Brachypodium distachyon
miR5163b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>cbn-miR-7631 MIMAT0029673 Caenorhabditis brenneri miR-7631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagat 6
||||||
Sbjct: 1 atagat 6
>mdo-miR-7251-3p MIMAT0028469 Monodelphis domestica miR-7251-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagata 7
||||||
Sbjct: 8 tagata 3
>sbi-miR5568e-3p MIMAT0026439 Sorghum bicolor miR5568e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagata 7
||||||
Sbjct: 6 tagata 1
>bdi-miR5200c MIMAT0020757 Brachypodium distachyon miR5200c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>sko-miR-4844 MIMAT0020064 Saccoglossus kowalevskii miR-4844
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>csi-miR3951 MIMAT0018492 Citrus sinensis miR3951
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>far-miR1122 MIMAT0018366 Festuca arundinacea miR1122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>hsa-miR-3935 MIMAT0018350 Homo sapiens miR-3935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 3 tagata 8
>ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>bmo-miR-3399 MIMAT0015603 Bombyx mori miR-3399
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagata 7
||||||
Sbjct: 6 tagata 1
>api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagat 6
||||||
Sbjct: 3 atagat 8
>bmo-miR-2770-5p MIMAT0013651 Bombyx mori miR-2770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>gma-miR1528 MIMAT0007390 Glycine max miR1528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atagat 6
||||||
Sbjct: 1 atagat 6
>tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
>mmu-miR-878-5p MIMAT0004932 Mus musculus miR-878-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tagata 7
||||||
Sbjct: 6 tagata 1
>hsa-miR-577 MIMAT0003242 Homo sapiens miR-577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tagata 7
||||||
Sbjct: 1 tagata 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 47
Number of extensions: 44
Number of successful extensions: 38
Number of sequences better than 100.0: 38
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)