BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-19-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577                       14      20
rlcv-miR-rL1-19-5p MIMAT0016942 Rhesus lymphocryptovirus miR-rL1...    14      20
mmu-miR-701-3p MIMAT0017257 Mus musculus miR-701-3p                    14      20
ata-miR5200-3p MIMAT0037139 Aegilops tauschii miR5200-3p               12      80
tae-miR5200 MIMAT0037000 Triticum aestivum miR5200                     12      80
bdi-miR5200b-3p MIMAT0035547 Brachypodium distachyon miR5200b-3p       12      80
bdi-miR5200a-3p MIMAT0035545 Brachypodium distachyon miR5200a-3p       12      80
bdi-miR9492 MIMAT0035501 Brachypodium distachyon miR9492               12      80
gra-miR7484f MIMAT0034157 Gossypium raimondii miR7484f                 12      80
pxy-miR-8535-3p MIMAT0033784 Plutella xylostella miR-8535-3p           12      80
pxy-miR-8491 MIMAT0033699 Plutella xylostella miR-8491                 12      80
sma-miR-8430-5p MIMAT0033564 Schistosoma mansoni miR-8430-5p           12      80
ppc-miR-8280-3p MIMAT0033062 Pristionchus pacificus miR-8280-3p        12      80
ssa-miR-146b-3p MIMAT0032375 Salmo salar miR-146b-3p                   12      80
ssa-miR-146a-3-3p MIMAT0032373 Salmo salar miR-146a-3-3p               12      80
ssa-miR-146a-3p MIMAT0032372 Salmo salar miR-146a-3p                   12      80
bdi-miR7764-3p MIMAT0030275 Brachypodium distachyon miR7764-3p         12      80
bdi-miR5163b-3p MIMAT0030098 Brachypodium distachyon miR5163b-3p       12      80
cbn-miR-7631 MIMAT0029673 Caenorhabditis brenneri miR-7631             12      80
mdo-miR-7251-3p MIMAT0028469 Monodelphis domestica miR-7251-3p         12      80
sbi-miR5568e-3p MIMAT0026439 Sorghum bicolor miR5568e-3p               12      80
bdi-miR5200c MIMAT0020757 Brachypodium distachyon miR5200c             12      80
sko-miR-4844 MIMAT0020064 Saccoglossus kowalevskii miR-4844            12      80
csi-miR3951 MIMAT0018492 Citrus sinensis miR3951                       12      80
far-miR1122 MIMAT0018366 Festuca arundinacea miR1122                   12      80
hsa-miR-3935 MIMAT0018350 Homo sapiens miR-3935                        12      80
ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577                        12      80
bmo-miR-3399 MIMAT0015603 Bombyx mori miR-3399                         12      80
api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046                 12      80
bmo-miR-2770-5p MIMAT0013651 Bombyx mori miR-2770-5p                   12      80
bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122               12      80
ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577                       12      80
mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p                  12      80
gma-miR1528 MIMAT0007390 Glycine max miR1528                           12      80
tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a                   12      80
dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p         12      80
mmu-miR-878-5p MIMAT0004932 Mus musculus miR-878-5p                    12      80
hsa-miR-577 MIMAT0003242 Homo sapiens miR-577                          12      80
>ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atagata 7
         |||||||
Sbjct: 1 atagata 7
>rlcv-miR-rL1-19-5p MIMAT0016942 Rhesus lymphocryptovirus
         miR-rL1-19-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atagata 7
         |||||||
Sbjct: 2 atagata 8
>mmu-miR-701-3p MIMAT0017257 Mus musculus miR-701-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atagata 7
         |||||||
Sbjct: 7 atagata 1
>ata-miR5200-3p MIMAT0037139 Aegilops tauschii miR5200-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>tae-miR5200 MIMAT0037000 Triticum aestivum miR5200
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>bdi-miR5200b-3p MIMAT0035547 Brachypodium distachyon
         miR5200b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>bdi-miR5200a-3p MIMAT0035545 Brachypodium distachyon
         miR5200a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>bdi-miR9492 MIMAT0035501 Brachypodium distachyon miR9492
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagata 7
         ||||||
Sbjct: 6 tagata 1
>gra-miR7484f MIMAT0034157 Gossypium raimondii miR7484f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagata 7
         ||||||
Sbjct: 6 tagata 1
>pxy-miR-8535-3p MIMAT0033784 Plutella xylostella miR-8535-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>pxy-miR-8491 MIMAT0033699 Plutella xylostella miR-8491
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>sma-miR-8430-5p MIMAT0033564 Schistosoma mansoni miR-8430-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagata 7
         ||||||
Sbjct: 6 tagata 1
>ppc-miR-8280-3p MIMAT0033062 Pristionchus pacificus miR-8280-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atagat 6
         ||||||
Sbjct: 8 atagat 3
>ssa-miR-146b-3p MIMAT0032375 Salmo salar miR-146b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atagat 6
         ||||||
Sbjct: 6 atagat 1
>ssa-miR-146a-3-3p MIMAT0032373 Salmo salar miR-146a-3-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atagat 6
         ||||||
Sbjct: 6 atagat 1
>ssa-miR-146a-3p MIMAT0032372 Salmo salar miR-146a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atagat 6
         ||||||
Sbjct: 6 atagat 1
>bdi-miR7764-3p MIMAT0030275 Brachypodium distachyon miR7764-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atagat 6
         ||||||
Sbjct: 3 atagat 8
>bdi-miR5163b-3p MIMAT0030098 Brachypodium distachyon
         miR5163b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>cbn-miR-7631 MIMAT0029673 Caenorhabditis brenneri miR-7631
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atagat 6
         ||||||
Sbjct: 1 atagat 6
>mdo-miR-7251-3p MIMAT0028469 Monodelphis domestica miR-7251-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagata 7
         ||||||
Sbjct: 8 tagata 3
>sbi-miR5568e-3p MIMAT0026439 Sorghum bicolor miR5568e-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagata 7
         ||||||
Sbjct: 6 tagata 1
>bdi-miR5200c MIMAT0020757 Brachypodium distachyon miR5200c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>sko-miR-4844 MIMAT0020064 Saccoglossus kowalevskii miR-4844
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>csi-miR3951 MIMAT0018492 Citrus sinensis miR3951
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>far-miR1122 MIMAT0018366 Festuca arundinacea miR1122
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>hsa-miR-3935 MIMAT0018350 Homo sapiens miR-3935
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 3 tagata 8
>ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>bmo-miR-3399 MIMAT0015603 Bombyx mori miR-3399
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagata 7
         ||||||
Sbjct: 6 tagata 1
>api-miR-3046 MIMAT0014785 Acyrthosiphon pisum miR-3046
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atagat 6
         ||||||
Sbjct: 3 atagat 8
>bmo-miR-2770-5p MIMAT0013651 Bombyx mori miR-2770-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>gma-miR1528 MIMAT0007390 Glycine max miR1528
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atagat 6
         ||||||
Sbjct: 1 atagat 6
>tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
>mmu-miR-878-5p MIMAT0004932 Mus musculus miR-878-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tagata 7
         ||||||
Sbjct: 6 tagata 1
>hsa-miR-577 MIMAT0003242 Homo sapiens miR-577
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tagata 7
         ||||||
Sbjct: 1 tagata 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 47
Number of extensions: 44
Number of successful extensions: 38
Number of sequences better than 100.0: 38
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)