BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s67
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
aly-miR2112-3p MIMAT0017662 Arabidopsis lyrata miR2112-3p 14 20
ath-miR2112-3p MIMAT0011155 Arabidopsis thaliana miR2112-3p 14 20
tch-miR-374b-5p MIMAT0036583 Tupaia chinensis miR-374b-5p 12 80
chi-miR-374b-5p MIMAT0036182 Capra hircus miR-374b-5p 12 80
tae-miR1120c-5p MIMAT0035799 Triticum aestivum miR1120c-5p 12 80
tae-miR1130b-3p MIMAT0035796 Triticum aestivum miR1130b-3p 12 80
gra-miR7484k MIMAT0034218 Gossypium raimondii miR7484k 12 80
pxy-miR-8509 MIMAT0033731 Plutella xylostella miR-8509 12 80
stu-miR8043 MIMAT0030957 Solanum tuberosum miR8043 12 80
prd-miR-184-5p MIMAT0030788 Panagrellus redivivus miR-184-5p 12 80
oar-miR-374b MIMAT0030063 Ovis aries miR-374b 12 80
ghr-miR7499 MIMAT0029146 Gossypium hirsutum miR7499 12 80
oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus miR-7421-3p 12 80
mdo-miR-7374a-3p MIMAT0028795 Monodelphis domestica miR-7374a-3p 12 80
mdo-miR-7287-5p MIMAT0028556 Monodelphis domestica miR-7287-5p 12 80
mmu-miR-7210-3p MIMAT0028389 Mus musculus miR-7210-3p 12 80
bma-miR-5878 MIMAT0026377 Brugia malayi miR-5878 12 80
mdm-miR7120b MIMAT0026038 Malus domestica miR7120b 12 80
mdm-miR7120a MIMAT0026037 Malus domestica miR7120a 12 80
ggo-miR-374b MIMAT0024126 Gorilla gorilla miR-374b 12 80
cgr-miR-374-5p MIMAT0023939 Cricetulus griseus miR-374-5p 12 80
hvsa-miR-HSUR4-3p MIMAT0022685 Herpesvirus saimiri miR-HSUR4-3p 12 80
dme-miR-4974-3p MIMAT0020204 Drosophila melanogaster miR-4974-3p 12 80
pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p 12 80
tca-miR-3902-3p MIMAT0018909 Tribolium castaneum miR-3902-3p 12 80
tca-miR-3902-5p MIMAT0018908 Tribolium castaneum miR-3902-5p 12 80
tca-miR-3901-3p MIMAT0018907 Tribolium castaneum miR-3901-3p 12 80
ame-miR-3778 MIMAT0018555 Apis mellifera miR-3778 12 80
cin-miR-4210-5p MIMAT0016831 Ciona intestinalis miR-4210-5p 12 80
cin-miR-4179a-3p MIMAT0016791 Ciona intestinalis miR-4179a-3p 12 80
cin-miR-4097-5p MIMAT0016678 Ciona intestinalis miR-4097-5p 12 80
bmo-miR-3410 MIMAT0015616 Bombyx mori miR-3410 12 80
hsa-miR-3163 MIMAT0015037 Homo sapiens miR-3163 12 80
ssc-miR-374b-5p MIMAT0013915 Sus scrofa miR-374b-5p 12 80
eca-miR-374b MIMAT0013214 Equus caballus miR-374b 12 80
bmo-miR-2737 MIMAT0012615 Bombyx mori miR-2737 12 80
sme-miR-2164-5p MIMAT0012156 Schmidtea mediterranea miR-2164-5p 12 80
bta-miR-374b MIMAT0009302 Bos taurus miR-374b 12 80
ptr-miR-374b MIMAT0008124 Pan troglodytes miR-374b 12 80
cfa-miR-374b MIMAT0006754 Canis familiaris miR-374b 12 80
mml-miR-374b-5p MIMAT0006301 Macaca mulatta miR-374b-5p 12 80
mmu-miR-466l-3p MIMAT0005830 Mus musculus miR-466l-3p 12 80
hsa-miR-374b-5p MIMAT0004955 Homo sapiens miR-374b-5p 12 80
mmu-miR-374b-5p MIMAT0003727 Mus musculus miR-374b-5p 12 80
rno-miR-374-5p MIMAT0003208 Rattus norvegicus miR-374-5p 12 80
>aly-miR2112-3p MIMAT0017662 Arabidopsis lyrata miR2112-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atataaa 7
|||||||
Sbjct: 8 atataaa 2
>ath-miR2112-3p MIMAT0011155 Arabidopsis thaliana miR2112-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atataaa 7
|||||||
Sbjct: 8 atataaa 2
>tch-miR-374b-5p MIMAT0036583 Tupaia chinensis miR-374b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>chi-miR-374b-5p MIMAT0036182 Capra hircus miR-374b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>tae-miR1120c-5p MIMAT0035799 Triticum aestivum miR1120c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 3 atataa 8
>tae-miR1130b-3p MIMAT0035796 Triticum aestivum miR1130b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atataa 6
||||||
Sbjct: 8 atataa 3
>gra-miR7484k MIMAT0034218 Gossypium raimondii miR7484k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tataaa 7
||||||
Sbjct: 6 tataaa 1
>pxy-miR-8509 MIMAT0033731 Plutella xylostella miR-8509
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tataaa 7
||||||
Sbjct: 1 tataaa 6
>stu-miR8043 MIMAT0030957 Solanum tuberosum miR8043
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 3 atataa 8
>prd-miR-184-5p MIMAT0030788 Panagrellus redivivus miR-184-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tataaa 7
||||||
Sbjct: 1 tataaa 6
>oar-miR-374b MIMAT0030063 Ovis aries miR-374b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>ghr-miR7499 MIMAT0029146 Gossypium hirsutum miR7499
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus
miR-7421-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atataa 6
||||||
Sbjct: 6 atataa 1
>mdo-miR-7374a-3p MIMAT0028795 Monodelphis domestica
miR-7374a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 3 atataa 8
>mdo-miR-7287-5p MIMAT0028556 Monodelphis domestica miR-7287-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tataaa 7
||||||
Sbjct: 1 tataaa 6
>mmu-miR-7210-3p MIMAT0028389 Mus musculus miR-7210-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atataa 6
||||||
Sbjct: 6 atataa 1
>bma-miR-5878 MIMAT0026377 Brugia malayi miR-5878
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atataa 6
||||||
Sbjct: 6 atataa 1
>mdm-miR7120b MIMAT0026038 Malus domestica miR7120b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atataa 6
||||||
Sbjct: 8 atataa 3
>mdm-miR7120a MIMAT0026037 Malus domestica miR7120a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atataa 6
||||||
Sbjct: 8 atataa 3
>ggo-miR-374b MIMAT0024126 Gorilla gorilla miR-374b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>cgr-miR-374-5p MIMAT0023939 Cricetulus griseus miR-374-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>hvsa-miR-HSUR4-3p MIMAT0022685 Herpesvirus saimiri miR-HSUR4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tataaa 7
||||||
Sbjct: 6 tataaa 1
>dme-miR-4974-3p MIMAT0020204 Drosophila melanogaster
miR-4974-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tataaa 7
||||||
Sbjct: 1 tataaa 6
>pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 3 atataa 8
>tca-miR-3902-3p MIMAT0018909 Tribolium castaneum miR-3902-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>tca-miR-3902-5p MIMAT0018908 Tribolium castaneum miR-3902-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>tca-miR-3901-3p MIMAT0018907 Tribolium castaneum miR-3901-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tataaa 7
||||||
Sbjct: 8 tataaa 3
>ame-miR-3778 MIMAT0018555 Apis mellifera miR-3778
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 3 atataa 8
>cin-miR-4210-5p MIMAT0016831 Ciona intestinalis miR-4210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tataaa 7
||||||
Sbjct: 6 tataaa 1
>cin-miR-4179a-3p MIMAT0016791 Ciona intestinalis miR-4179a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tataaa 7
||||||
Sbjct: 7 tataaa 2
>cin-miR-4097-5p MIMAT0016678 Ciona intestinalis miR-4097-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 3 atataa 8
>bmo-miR-3410 MIMAT0015616 Bombyx mori miR-3410
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tataaa 7
||||||
Sbjct: 1 tataaa 6
>hsa-miR-3163 MIMAT0015037 Homo sapiens miR-3163
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tataaa 7
||||||
Sbjct: 1 tataaa 6
>ssc-miR-374b-5p MIMAT0013915 Sus scrofa miR-374b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>eca-miR-374b MIMAT0013214 Equus caballus miR-374b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>bmo-miR-2737 MIMAT0012615 Bombyx mori miR-2737
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tataaa 7
||||||
Sbjct: 7 tataaa 2
>sme-miR-2164-5p MIMAT0012156 Schmidtea mediterranea miR-2164-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atataa 6
||||||
Sbjct: 6 atataa 1
>bta-miR-374b MIMAT0009302 Bos taurus miR-374b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>ptr-miR-374b MIMAT0008124 Pan troglodytes miR-374b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>cfa-miR-374b MIMAT0006754 Canis familiaris miR-374b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>mml-miR-374b-5p MIMAT0006301 Macaca mulatta miR-374b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>mmu-miR-466l-3p MIMAT0005830 Mus musculus miR-466l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tataaa 7
||||||
Sbjct: 1 tataaa 6
>hsa-miR-374b-5p MIMAT0004955 Homo sapiens miR-374b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>mmu-miR-374b-5p MIMAT0003727 Mus musculus miR-374b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
>rno-miR-374-5p MIMAT0003208 Rattus norvegicus miR-374-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atataa 6
||||||
Sbjct: 1 atataa 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 85
Number of extensions: 83
Number of successful extensions: 45
Number of sequences better than 100.0: 45
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 45
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
