BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h8
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus miR-135b... 14 20
hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b 14 20
hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a 14 20
aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p 14 20
hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p 14 20
cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p 14 20
mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p 14 20
dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p 14 20
gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p 14 20
oha-miR-135-1-3p MIMAT0036705 Ophiophagus hannah miR-135-1-3p 12 80
gma-miR9726 MIMAT0036342 Glycine max miR9726 12 80
chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p 12 80
efu-miR-9363 MIMAT0035177 Eptesicus fuscus miR-9363 12 80
ssa-miR-135a-3p MIMAT0032343 Salmo salar miR-135a-3p 12 80
rgl-miR7807a-5p MIMAT0032250 Rehmannia glutinosa miR7807a-5p 12 80
bdi-miR7747-3p MIMAT0030235 Brachypodium distachyon miR7747-3p 12 80
oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus miR-7421-3p 12 80
mdo-miR-7385f-3p MIMAT0028879 Monodelphis domestica miR-7385f-3p 12 80
mml-miR-7187-3p MIMAT0028329 Macaca mulatta miR-7187-3p 12 80
bma-miR-5871 MIMAT0026370 Brugia malayi miR-5871 12 80
osa-miR6245 MIMAT0024865 Oryza sativa miR6245 12 80
bfl-miR-4885 MIMAT0020471 Branchiostoma floridae miR-4885 12 80
pma-miR-4543 MIMAT0019572 Petromyzon marinus miR-4543 12 80
pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p 12 80
vvi-miR3633a-3p MIMAT0018038 Vitis vinifera miR3633a-3p 12 80
ppy-miR-337-3p MIMAT0015839 Pongo pygmaeus miR-337-3p 12 80
aly-miR860-5p MIMAT0017649 Arabidopsis lyrata miR860-5p 12 80
osa-miR2876-3p MIMAT0013826 Oryza sativa miR2876-3p 12 80
mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p 12 80
sme-miR-216-3p MIMAT0012143 Schmidtea mediterranea miR-216-3p 12 80
ptr-miR-337 MIMAT0008105 Pan troglodytes miR-337 12 80
mml-miR-337-3p MIMAT0006276 Macaca mulatta miR-337-3p 12 80
mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p 12 80
gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p 12 80
hsa-miR-337-3p MIMAT0000754 Homo sapiens miR-337-3p 12 80
hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p 12 80
hsa-miR-135a-3p MIMAT0004595 Homo sapiens miR-135a-3p 12 80
mmu-miR-135a-1-3p MIMAT0004531 Mus musculus miR-135a-1-3p 12 80
>oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus
miR-135b-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atatagg 7
|||||||
Sbjct: 1 atatagg 7
>hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atatagg 7
|||||||
Sbjct: 8 atatagg 2
>hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atatagg 7
|||||||
Sbjct: 7 atatagg 1
>aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atatagg 7
|||||||
Sbjct: 1 atatagg 7
>hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atatagg 7
|||||||
Sbjct: 2 atatagg 8
>cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atatagg 7
|||||||
Sbjct: 8 atatagg 2
>mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atatagg 7
|||||||
Sbjct: 1 atatagg 7
>dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atatagg 7
|||||||
Sbjct: 1 atatagg 7
>gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atatagg 7
|||||||
Sbjct: 1 atatagg 7
>oha-miR-135-1-3p MIMAT0036705 Ophiophagus hannah miR-135-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
>gma-miR9726 MIMAT0036342 Glycine max miR9726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
>chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 6 atatag 1
>efu-miR-9363 MIMAT0035177 Eptesicus fuscus miR-9363
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 6 atatag 1
>ssa-miR-135a-3p MIMAT0032343 Salmo salar miR-135a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
>rgl-miR7807a-5p MIMAT0032250 Rehmannia glutinosa miR7807a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 8 atatag 3
>bdi-miR7747-3p MIMAT0030235 Brachypodium distachyon miR7747-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus
miR-7421-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atatag 6
||||||
Sbjct: 3 atatag 8
>mdo-miR-7385f-3p MIMAT0028879 Monodelphis domestica
miR-7385f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atatag 6
||||||
Sbjct: 3 atatag 8
>mml-miR-7187-3p MIMAT0028329 Macaca mulatta miR-7187-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
>bma-miR-5871 MIMAT0026370 Brugia malayi miR-5871
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
>osa-miR6245 MIMAT0024865 Oryza sativa miR6245
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 3 tatagg 8
>bfl-miR-4885 MIMAT0020471 Branchiostoma floridae miR-4885
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 8 atatag 3
>pma-miR-4543 MIMAT0019572 Petromyzon marinus miR-4543
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
>pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 6 atatag 1
>vvi-miR3633a-3p MIMAT0018038 Vitis vinifera miR3633a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>ppy-miR-337-3p MIMAT0015839 Pongo pygmaeus miR-337-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>aly-miR860-5p MIMAT0017649 Arabidopsis lyrata miR860-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atatag 6
||||||
Sbjct: 1 atatag 6
>osa-miR2876-3p MIMAT0013826 Oryza sativa miR2876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 6 atatag 1
>sme-miR-216-3p MIMAT0012143 Schmidtea mediterranea miR-216-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>ptr-miR-337 MIMAT0008105 Pan troglodytes miR-337
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>mml-miR-337-3p MIMAT0006276 Macaca mulatta miR-337-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 6 atatag 1
>gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 6 atatag 1
>hsa-miR-337-3p MIMAT0000754 Homo sapiens miR-337-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tatagg 7
||||||
Sbjct: 8 tatagg 3
>hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atatag 6
||||||
Sbjct: 6 atatag 1
>hsa-miR-135a-3p MIMAT0004595 Homo sapiens miR-135a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
>mmu-miR-135a-1-3p MIMAT0004531 Mus musculus miR-135a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tatagg 7
||||||
Sbjct: 1 tatagg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 56
Number of extensions: 47
Number of successful extensions: 38
Number of sequences better than 100.0: 38
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)