BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv1-miR-h8
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus miR-135b...    14      20
hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b              14      20
hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a              14      20
aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p         14      20
hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p                   14      20
cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p            14      20
mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p            14      20
dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p                   14      20
gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p             14      20
oha-miR-135-1-3p MIMAT0036705 Ophiophagus hannah miR-135-1-3p          12      80
gma-miR9726 MIMAT0036342 Glycine max miR9726                           12      80
chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p                  12      80
efu-miR-9363 MIMAT0035177 Eptesicus fuscus miR-9363                    12      80
ssa-miR-135a-3p MIMAT0032343 Salmo salar miR-135a-3p                   12      80
rgl-miR7807a-5p MIMAT0032250 Rehmannia glutinosa miR7807a-5p           12      80
bdi-miR7747-3p MIMAT0030235 Brachypodium distachyon miR7747-3p         12      80
oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus miR-7421-3p      12      80
mdo-miR-7385f-3p MIMAT0028879 Monodelphis domestica miR-7385f-3p       12      80
mml-miR-7187-3p MIMAT0028329 Macaca mulatta miR-7187-3p                12      80
bma-miR-5871 MIMAT0026370 Brugia malayi miR-5871                       12      80
osa-miR6245 MIMAT0024865 Oryza sativa miR6245                          12      80
bfl-miR-4885 MIMAT0020471 Branchiostoma floridae miR-4885              12      80
pma-miR-4543 MIMAT0019572 Petromyzon marinus miR-4543                  12      80
pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p                12      80
vvi-miR3633a-3p MIMAT0018038 Vitis vinifera miR3633a-3p                12      80
ppy-miR-337-3p MIMAT0015839 Pongo pygmaeus miR-337-3p                  12      80
aly-miR860-5p MIMAT0017649 Arabidopsis lyrata miR860-5p                12      80
osa-miR2876-3p MIMAT0013826 Oryza sativa miR2876-3p                    12      80
mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p         12      80
sme-miR-216-3p MIMAT0012143 Schmidtea mediterranea miR-216-3p          12      80
ptr-miR-337 MIMAT0008105 Pan troglodytes miR-337                       12      80
mml-miR-337-3p MIMAT0006276 Macaca mulatta miR-337-3p                  12      80
mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p                12      80
gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p                 12      80
hsa-miR-337-3p MIMAT0000754 Homo sapiens miR-337-3p                    12      80
hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p                  12      80
hsa-miR-135a-3p MIMAT0004595 Homo sapiens miR-135a-3p                  12      80
mmu-miR-135a-1-3p MIMAT0004531 Mus musculus miR-135a-1-3p              12      80
>oan-miR-135b-2-3p MIMAT0031114 Ornithorhynchus anatinus
         miR-135b-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 1 atatagg 7
>hco-miR-5894b MIMAT0023400 Haemonchus contortus miR-5894b
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 8 atatagg 2
>hco-miR-5894a MIMAT0023334 Haemonchus contortus miR-5894a
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 7 atatagg 1
>aca-miR-135-1-3p MIMAT0021751 Anolis carolinensis miR-135-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 1 atatagg 7
>hsv1-miR-H8-5p MIMAT0012597 Herpes Simplex miR-H8-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 2 atatagg 8
>cte-miR-2686a-5p MIMAT0013535 Capitella teleta miR-2686a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 8 atatagg 2
>mml-miR-135a-1-3p MIMAT0031029 Macaca mulatta miR-135a-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 1 atatagg 7
>dre-miR-135b-3p MIMAT0032006 Danio rerio miR-135b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 1 atatagg 7
>gga-miR-135a-1-3p MIMAT0031036 Gallus gallus miR-135a-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atatagg 7
         |||||||
Sbjct: 1 atatagg 7
>oha-miR-135-1-3p MIMAT0036705 Ophiophagus hannah miR-135-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
>gma-miR9726 MIMAT0036342 Glycine max miR9726
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
>chi-miR-190a-3p MIMAT0036020 Capra hircus miR-190a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 6 atatag 1
>efu-miR-9363 MIMAT0035177 Eptesicus fuscus miR-9363
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 6 atatag 1
>ssa-miR-135a-3p MIMAT0032343 Salmo salar miR-135a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
>rgl-miR7807a-5p MIMAT0032250 Rehmannia glutinosa miR7807a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 8 atatag 3
>bdi-miR7747-3p MIMAT0030235 Brachypodium distachyon miR7747-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>oan-miR-7421-3p MIMAT0028993 Ornithorhynchus anatinus
         miR-7421-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atatag 6
         ||||||
Sbjct: 3 atatag 8
>mdo-miR-7385f-3p MIMAT0028879 Monodelphis domestica
         miR-7385f-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atatag 6
         ||||||
Sbjct: 3 atatag 8
>mml-miR-7187-3p MIMAT0028329 Macaca mulatta miR-7187-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
>bma-miR-5871 MIMAT0026370 Brugia malayi miR-5871
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
>osa-miR6245 MIMAT0024865 Oryza sativa miR6245
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 3 tatagg 8
>bfl-miR-4885 MIMAT0020471 Branchiostoma floridae miR-4885
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 8 atatag 3
>pma-miR-4543 MIMAT0019572 Petromyzon marinus miR-4543
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
>pma-let-7b-3p MIMAT0019566 Petromyzon marinus let-7b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 6 atatag 1
>vvi-miR3633a-3p MIMAT0018038 Vitis vinifera miR3633a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>ppy-miR-337-3p MIMAT0015839 Pongo pygmaeus miR-337-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>aly-miR860-5p MIMAT0017649 Arabidopsis lyrata miR860-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atatag 6
         ||||||
Sbjct: 1 atatag 6
>osa-miR2876-3p MIMAT0013826 Oryza sativa miR2876-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>mdo-miR-190a-3p MIMAT0026933 Monodelphis domestica miR-190a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 6 atatag 1
>sme-miR-216-3p MIMAT0012143 Schmidtea mediterranea miR-216-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>ptr-miR-337 MIMAT0008105 Pan troglodytes miR-337
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>mml-miR-337-3p MIMAT0006276 Macaca mulatta miR-337-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>mml-miR-190a-3p MIMAT0026572 Macaca mulatta miR-190a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 6 atatag 1
>gga-miR-190a-3p MIMAT0026525 Gallus gallus miR-190a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 6 atatag 1
>hsa-miR-337-3p MIMAT0000754 Homo sapiens miR-337-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 8 tatagg 3
>hsa-miR-190a-3p MIMAT0026482 Homo sapiens miR-190a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atatag 6
         ||||||
Sbjct: 6 atatag 1
>hsa-miR-135a-3p MIMAT0004595 Homo sapiens miR-135a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
>mmu-miR-135a-1-3p MIMAT0004531 Mus musculus miR-135a-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tatagg 7
         ||||||
Sbjct: 1 tatagg 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 56
Number of extensions: 47
Number of successful extensions: 38
Number of sequences better than 100.0: 38
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)