BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-26
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sme-miR-2168-5p MIMAT0011266 Schmidtea mediterranea miR-2168-5p 16 6.9
ppc-miR-8317a-3p MIMAT0033090 Pristionchus pacificus miR-8317a-3p 14 27
hco-miR-5912b MIMAT0023423 Haemonchus contortus miR-5912b 14 27
rno-miR-3578 MIMAT0017866 Rattus norvegicus miR-3578 14 27
bmo-miR-2828 MIMAT0013740 Bombyx mori miR-2828 14 27
cel-miR-786-5p MIMAT0015239 Caenorhabditis elegans miR-786-5p 14 27
>sme-miR-2168-5p MIMAT0011266 Schmidtea mediterranea miR-2168-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atattcgt 8
||||||||
Sbjct: 1 atattcgt 8
>ppc-miR-8317a-3p MIMAT0033090 Pristionchus pacificus
miR-8317a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atattcg 7
|||||||
Sbjct: 7 atattcg 1
>hco-miR-5912b MIMAT0023423 Haemonchus contortus miR-5912b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atattcg 7
|||||||
Sbjct: 1 atattcg 7
>rno-miR-3578 MIMAT0017866 Rattus norvegicus miR-3578
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atattcg 7
|||||||
Sbjct: 8 atattcg 2
>bmo-miR-2828 MIMAT0013740 Bombyx mori miR-2828
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atattcg 7
|||||||
Sbjct: 1 atattcg 7
>cel-miR-786-5p MIMAT0015239 Caenorhabditis elegans miR-786-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atattcg 7
|||||||
Sbjct: 7 atattcg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 64
Number of extensions: 57
Number of successful extensions: 48
Number of sequences better than 100.0: 6
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
