BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s46
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p 14 20
efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308 14 20
efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b 14 20
mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p 14 20
ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421 14 20
ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p 14 20
ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p 14 20
aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244 14 20
cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p 14 20
ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421 14 20
dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p 14 20
dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p 14 20
bta-miR-2488 MIMAT0012084 Bos taurus miR-2488 14 20
bta-miR-421 MIMAT0009314 Bos taurus miR-421 14 20
ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421 14 20
cfa-miR-421 MIMAT0006755 Canis familiaris miR-421 14 20
mml-miR-421 MIMAT0006319 Macaca mulatta miR-421 14 20
dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p 14 20
mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p 14 20
bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p 14 20
hsa-miR-421 MIMAT0003339 Homo sapiens miR-421 14 20
rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p 14 20
oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p 12 80
tch-miR-505-3p MIMAT0036499 Tupaia chinensis miR-505-3p 12 80
chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p 12 80
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p 12 80
hvu-miR397b-3p MIMAT0035814 Hordeum vulgare miR397b-3p 12 80
bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p 12 80
nve-miR-9440 MIMAT0035401 Nematostella vectensis miR-9440 12 80
efu-miR-9355 MIMAT0035145 Eptesicus fuscus miR-9355 12 80
efu-miR-9318a MIMAT0035003 Eptesicus fuscus miR-9318a 12 80
eca-miR-8990 MIMAT0034527 Equus caballus miR-8990 12 80
gra-miR8761 MIMAT0034191 Gossypium raimondii miR8761 12 80
esi-miR8624a MIMAT0033961 Ectocarpus siliculosus miR8624a 12 80
atr-miR8594.1 MIMAT0033882 Amborella trichopoda miR8594.1 12 80
pxy-miR-8543 MIMAT0033806 Plutella xylostella miR-8543 12 80
sma-miR-8476-3p MIMAT0033674 Schistosoma mansoni miR-8476-3p 12 80
sma-miR-8415-5p MIMAT0033534 Schistosoma mansoni miR-8415-5p 12 80
ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p 12 80
ppc-miR-8253-5p MIMAT0032974 Pristionchus pacificus miR-8253-5p 12 80
stu-miR398a-5p MIMAT0031331 Solanum tuberosum miR398a-5p 12 80
stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p 12 80
prd-miR-7877-5p MIMAT0030506 Panagrellus redivivus miR-7877-5p 12 80
bdi-miR7762-5p MIMAT0030270 Brachypodium distachyon miR7762-5p 12 80
cbn-miR-7621a MIMAT0029660 Caenorhabditis brenneri miR-7621a 12 80
crm-miR-7603 MIMAT0029620 Caenorhabditis remanei miR-7603 12 80
mml-miR-7198-3p MIMAT0028361 Macaca mulatta miR-7198-3p 12 80
sbi-miR6233-5p MIMAT0026448 Sorghum bicolor miR6233-5p 12 80
ppe-miR6282 MIMAT0027312 Prunus persica miR6282 12 80
cin-miR-5610-3p MIMAT0022348 Ciona intestinalis miR-5610-3p 12 80
aca-miR-5457 MIMAT0022084 Anolis carolinensis miR-5457 12 80
mtr-miR2670e MIMAT0021208 Medicago truncatula miR2670e 12 80
gma-miR4410 MIMAT0018329 Glycine max miR4410 12 80
gma-miR4341 MIMAT0018229 Glycine max miR4341 12 80
tca-miR-3868-3p MIMAT0018829 Tribolium castaneum miR-3868-3p 12 80
vvi-miR3631d MIMAT0018034 Vitis vinifera miR3631d 12 80
vvi-miR3631c MIMAT0018033 Vitis vinifera miR3631c 12 80
vvi-miR3631b-5p MIMAT0018031 Vitis vinifera miR3631b-5p 12 80
vvi-miR3631a-5p MIMAT0018029 Vitis vinifera miR3631a-5p 12 80
cin-miR-4074-5p MIMAT0016636 Ciona intestinalis miR-4074-5p 12 80
rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p 12 80
ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267 12 80
ppy-miR-505 MIMAT0015928 Pongo pygmaeus miR-505 12 80
aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p 12 80
aly-miR398b-5p MIMAT0017567 Arabidopsis lyrata miR398b-5p 12 80
hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p 12 80
mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p 12 80
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505 12 80
eca-miR-545 MIMAT0013239 Equus caballus miR-545 12 80
eca-miR-505 MIMAT0013229 Equus caballus miR-505 12 80
bta-miR-505 MIMAT0009341 Bos taurus miR-505 12 80
dya-miR-287 MIMAT0009102 Drosophila yakuba miR-287 12 80
dwi-miR-287 MIMAT0009003 Drosophila willistoni miR-287 12 80
dvi-miR-287 MIMAT0008930 Drosophila virilis miR-287 12 80
dsi-miR-287 MIMAT0008899 Drosophila simulans miR-287 12 80
dse-miR-287 MIMAT0008770 Drosophila sechellia miR-287 12 80
dpe-miR-287 MIMAT0008757 Drosophila persimilis miR-287 12 80
dmo-miR-287 MIMAT0008659 Drosophila mojavensis miR-287 12 80
dgr-miR-287 MIMAT0008563 Drosophila grimshawi miR-287 12 80
der-miR-287 MIMAT0008483 Drosophila erecta miR-287 12 80
dan-miR-287 MIMAT0008424 Drosophila ananassae miR-287 12 80
ptr-miR-505 MIMAT0008178 Pan troglodytes miR-505 12 80
ptr-miR-1267 MIMAT0007991 Pan troglodytes miR-1267 12 80
osa-miR1873 MIMAT0007826 Oryza sativa miR1873 12 80
mml-miR-505-3p MIMAT0006369 Macaca mulatta miR-505-3p 12 80
gga-miR-1728-5p MIMAT0007627 Gallus gallus miR-1728-5p 12 80
oan-miR-1396 MIMAT0007198 Ornithorhynchus anatinus miR-1396 12 80
hsa-miR-1267 MIMAT0005921 Homo sapiens miR-1267 12 80
mmu-miR-505-3p MIMAT0003513 Mus musculus miR-505-3p 12 80
hsa-miR-505-3p MIMAT0002876 Homo sapiens miR-505-3p 12 80
dps-miR-287 MIMAT0001251 Drosophila pseudoobscura miR-287 12 80
dme-miR-287-3p MIMAT0000360 Drosophila melanogaster miR-287-3p 12 80
>chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 7 atcaaca 1
>efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 7 atcaaca 1
>mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 8 atcaaca 2
>cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 8 atcaaca 2
>ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 2 atcaaca 8
>dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 2 atcaaca 8
>bta-miR-2488 MIMAT0012084 Bos taurus miR-2488
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 8 atcaaca 2
>bta-miR-421 MIMAT0009314 Bos taurus miR-421
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>cfa-miR-421 MIMAT0006755 Canis familiaris miR-421
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>mml-miR-421 MIMAT0006319 Macaca mulatta miR-421
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>hsa-miR-421 MIMAT0003339 Homo sapiens miR-421
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>tch-miR-505-3p MIMAT0036499 Tupaia chinensis miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>hvu-miR397b-3p MIMAT0035814 Hordeum vulgare miR397b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcaac 6
||||||
Sbjct: 1 atcaac 6
>bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 7 tcaaca 2
>nve-miR-9440 MIMAT0035401 Nematostella vectensis miR-9440
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcaac 6
||||||
Sbjct: 3 atcaac 8
>efu-miR-9355 MIMAT0035145 Eptesicus fuscus miR-9355
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>efu-miR-9318a MIMAT0035003 Eptesicus fuscus miR-9318a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 6 tcaaca 1
>eca-miR-8990 MIMAT0034527 Equus caballus miR-8990
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 6 tcaaca 1
>gra-miR8761 MIMAT0034191 Gossypium raimondii miR8761
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 6 tcaaca 1
>esi-miR8624a MIMAT0033961 Ectocarpus siliculosus miR8624a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>atr-miR8594.1 MIMAT0033882 Amborella trichopoda miR8594.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcaac 6
||||||
Sbjct: 3 atcaac 8
>pxy-miR-8543 MIMAT0033806 Plutella xylostella miR-8543
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcaac 6
||||||
Sbjct: 3 atcaac 8
>sma-miR-8476-3p MIMAT0033674 Schistosoma mansoni miR-8476-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>sma-miR-8415-5p MIMAT0033534 Schistosoma mansoni miR-8415-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>ppc-miR-8253-5p MIMAT0032974 Pristionchus pacificus miR-8253-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 6 tcaaca 1
>stu-miR398a-5p MIMAT0031331 Solanum tuberosum miR398a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>prd-miR-7877-5p MIMAT0030506 Panagrellus redivivus miR-7877-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>bdi-miR7762-5p MIMAT0030270 Brachypodium distachyon miR7762-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>cbn-miR-7621a MIMAT0029660 Caenorhabditis brenneri miR-7621a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>crm-miR-7603 MIMAT0029620 Caenorhabditis remanei miR-7603
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 6 tcaaca 1
>mml-miR-7198-3p MIMAT0028361 Macaca mulatta miR-7198-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>sbi-miR6233-5p MIMAT0026448 Sorghum bicolor miR6233-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 6 tcaaca 1
>ppe-miR6282 MIMAT0027312 Prunus persica miR6282
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 6 atcaac 1
>cin-miR-5610-3p MIMAT0022348 Ciona intestinalis miR-5610-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>aca-miR-5457 MIMAT0022084 Anolis carolinensis miR-5457
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>mtr-miR2670e MIMAT0021208 Medicago truncatula miR2670e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>gma-miR4410 MIMAT0018329 Glycine max miR4410
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>gma-miR4341 MIMAT0018229 Glycine max miR4341
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>tca-miR-3868-3p MIMAT0018829 Tribolium castaneum miR-3868-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcaac 6
||||||
Sbjct: 1 atcaac 6
>vvi-miR3631d MIMAT0018034 Vitis vinifera miR3631d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>vvi-miR3631c MIMAT0018033 Vitis vinifera miR3631c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>vvi-miR3631b-5p MIMAT0018031 Vitis vinifera miR3631b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>vvi-miR3631a-5p MIMAT0018029 Vitis vinifera miR3631a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>cin-miR-4074-5p MIMAT0016636 Ciona intestinalis miR-4074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 6 tcaaca 1
>rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>ppy-miR-505 MIMAT0015928 Pongo pygmaeus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>aly-miR398b-5p MIMAT0017567 Arabidopsis lyrata miR398b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>eca-miR-545 MIMAT0013239 Equus caballus miR-545
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>eca-miR-505 MIMAT0013229 Equus caballus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>bta-miR-505 MIMAT0009341 Bos taurus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>dya-miR-287 MIMAT0009102 Drosophila yakuba miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dwi-miR-287 MIMAT0009003 Drosophila willistoni miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dvi-miR-287 MIMAT0008930 Drosophila virilis miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dsi-miR-287 MIMAT0008899 Drosophila simulans miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dse-miR-287 MIMAT0008770 Drosophila sechellia miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dpe-miR-287 MIMAT0008757 Drosophila persimilis miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dmo-miR-287 MIMAT0008659 Drosophila mojavensis miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dgr-miR-287 MIMAT0008563 Drosophila grimshawi miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>der-miR-287 MIMAT0008483 Drosophila erecta miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dan-miR-287 MIMAT0008424 Drosophila ananassae miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>ptr-miR-505 MIMAT0008178 Pan troglodytes miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>ptr-miR-1267 MIMAT0007991 Pan troglodytes miR-1267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>osa-miR1873 MIMAT0007826 Oryza sativa miR1873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 1 tcaaca 6
>mml-miR-505-3p MIMAT0006369 Macaca mulatta miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>gga-miR-1728-5p MIMAT0007627 Gallus gallus miR-1728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcaac 6
||||||
Sbjct: 8 atcaac 3
>oan-miR-1396 MIMAT0007198 Ornithorhynchus anatinus miR-1396
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>hsa-miR-1267 MIMAT0005921 Homo sapiens miR-1267
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>mmu-miR-505-3p MIMAT0003513 Mus musculus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>hsa-miR-505-3p MIMAT0002876 Homo sapiens miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcaaca 7
||||||
Sbjct: 3 tcaaca 8
>dps-miR-287 MIMAT0001251 Drosophila pseudoobscura miR-287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
>dme-miR-287-3p MIMAT0000360 Drosophila melanogaster miR-287-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcaaca 7
||||||
Sbjct: 8 tcaaca 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 139
Number of extensions: 117
Number of successful extensions: 92
Number of sequences better than 100.0: 92
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 92
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
