BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hpv16-miR-h6
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p                      16   6.9  
aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244                    16   6.9  
bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p                      16   6.9  
oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p              14      27
chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p                    14      27
chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p                    14      27
bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p                   14      27
efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308                    14      27
efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b                  14      27
ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p        14      27
stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p                 14      27
mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p           14      27
hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p                  14      27
ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421                       14      27
ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p                      14      27
cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p            14      27
rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p             14      27
ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421                        14      27
aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p                14      27
hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p                  14      27
mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p                  14      27
eca-miR-545 MIMAT0013239 Equus caballus miR-545                        14      27
dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p             14      27
dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p        14      27
bta-miR-2488 MIMAT0012084 Bos taurus miR-2488                          14      27
bta-miR-421 MIMAT0009314 Bos taurus miR-421                            14      27
ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421                       14      27
cfa-miR-421 MIMAT0006755 Canis familiaris miR-421                      14      27
mml-miR-421 MIMAT0006319 Macaca mulatta miR-421                        14      27
dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p         14      27
mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p                    14      27
hsa-miR-421 MIMAT0003339 Homo sapiens miR-421                          14      27
rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p               14      27
>ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 atcaacaa 8
         ||||||||
Sbjct: 1 atcaacaa 8
>aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 atcaacaa 8
         ||||||||
Sbjct: 8 atcaacaa 1
>bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 atcaacaa 8
         ||||||||
Sbjct: 1 atcaacaa 8
>oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 1 tcaacaa 7
>chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 1 tcaacaa 7
>chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 7 tcaacaa 1
>efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 7 atcaaca 1
>efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 7 atcaaca 1
>ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 8 tcaacaa 2
>stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 8 tcaacaa 2
>mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 2 tcaacaa 8
>ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 8 atcaaca 2
>rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 1 tcaacaa 7
>ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 8 tcaacaa 2
>hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 1 tcaacaa 7
>mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 1 tcaacaa 7
>eca-miR-545 MIMAT0013239 Equus caballus miR-545
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcaacaa 8
         |||||||
Sbjct: 1 tcaacaa 7
>dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 2 atcaaca 8
>dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 2 atcaaca 8
>bta-miR-2488 MIMAT0012084 Bos taurus miR-2488
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 8 atcaaca 2
>bta-miR-421 MIMAT0009314 Bos taurus miR-421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>cfa-miR-421 MIMAT0006755 Canis familiaris miR-421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>mml-miR-421 MIMAT0006319 Macaca mulatta miR-421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>hsa-miR-421 MIMAT0003339 Homo sapiens miR-421
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
>rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcaaca 7
         |||||||
Sbjct: 1 atcaaca 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 213
Number of extensions: 177
Number of successful extensions: 144
Number of sequences better than 100.0: 33
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 33
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)