BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv16-miR-h6
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p 16 6.9
aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244 16 6.9
bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p 16 6.9
oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p 14 27
chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p 14 27
chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p 14 27
bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p 14 27
efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308 14 27
efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b 14 27
ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p 14 27
stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p 14 27
mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p 14 27
hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p 14 27
ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421 14 27
ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p 14 27
cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p 14 27
rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p 14 27
ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421 14 27
aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p 14 27
hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p 14 27
mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p 14 27
eca-miR-545 MIMAT0013239 Equus caballus miR-545 14 27
dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p 14 27
dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p 14 27
bta-miR-2488 MIMAT0012084 Bos taurus miR-2488 14 27
bta-miR-421 MIMAT0009314 Bos taurus miR-421 14 27
ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421 14 27
cfa-miR-421 MIMAT0006755 Canis familiaris miR-421 14 27
mml-miR-421 MIMAT0006319 Macaca mulatta miR-421 14 27
dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p 14 27
mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p 14 27
hsa-miR-421 MIMAT0003339 Homo sapiens miR-421 14 27
rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p 14 27
>ssc-miR-545-3p MIMAT0020594 Sus scrofa miR-545-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcaacaa 8
||||||||
Sbjct: 1 atcaacaa 8
>aly-miR4244 MIMAT0017933 Arabidopsis lyrata miR4244
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcaacaa 8
||||||||
Sbjct: 8 atcaacaa 1
>bta-miR-545-3p MIMAT0003807 Bos taurus miR-545-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcaacaa 8
||||||||
Sbjct: 1 atcaacaa 8
>oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaacaa 8
|||||||
Sbjct: 1 tcaacaa 7
>chi-miR-545-3p MIMAT0036278 Capra hircus miR-545-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaacaa 8
|||||||
Sbjct: 1 tcaacaa 7
>chi-miR-421-3p MIMAT0036219 Capra hircus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>bra-miR9566-5p MIMAT0035691 Brassica rapa miR9566-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaacaa 8
|||||||
Sbjct: 7 tcaacaa 1
>efu-miR-9308 MIMAT0034981 Eptesicus fuscus miR-9308
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 7 atcaaca 1
>efu-miR-9201b MIMAT0034787 Eptesicus fuscus miR-9201b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 7 atcaaca 1
>ppc-miR-8264-5p MIMAT0033012 Pristionchus pacificus miR-8264-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaacaa 8
|||||||
Sbjct: 8 tcaacaa 2
>stu-miR827-5p MIMAT0031272 Solanum tuberosum miR827-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaacaa 8
|||||||
Sbjct: 8 tcaacaa 2
>mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>hsa-miR-7159-5p MIMAT0028228 Homo sapiens miR-7159-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaacaa 8
|||||||
Sbjct: 2 tcaacaa 8
>ggo-miR-421 MIMAT0024168 Gorilla gorilla miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>ssc-miR-421-3p MIMAT0022962 Sus scrofa miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>cin-miR-4162-5p MIMAT0016768 Ciona intestinalis miR-4162-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 8 atcaaca 2
>rno-miR-3065-5p MIMAT0017839 Rattus norvegicus miR-3065-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaacaa 8
|||||||
Sbjct: 1 tcaacaa 7
>ppy-miR-421 MIMAT0015880 Pongo pygmaeus miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>aly-miR827-5p MIMAT0017607 Arabidopsis lyrata miR827-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcaacaa 8
|||||||
Sbjct: 8 tcaacaa 2
>hsa-miR-3065-5p MIMAT0015066 Homo sapiens miR-3065-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaacaa 8
|||||||
Sbjct: 1 tcaacaa 7
>mmu-miR-3065-5p MIMAT0014836 Mus musculus miR-3065-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaacaa 8
|||||||
Sbjct: 1 tcaacaa 7
>eca-miR-545 MIMAT0013239 Equus caballus miR-545
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcaacaa 8
|||||||
Sbjct: 1 tcaacaa 7
>dsi-miR-987-3p MIMAT0012434 Drosophila simulans miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 2 atcaaca 8
>dps-miR-987-3p MIMAT0012236 Drosophila pseudoobscura miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 2 atcaaca 8
>bta-miR-2488 MIMAT0012084 Bos taurus miR-2488
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcaaca 7
|||||||
Sbjct: 8 atcaaca 2
>bta-miR-421 MIMAT0009314 Bos taurus miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>ptr-miR-421 MIMAT0008140 Pan troglodytes miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>cfa-miR-421 MIMAT0006755 Canis familiaris miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>mml-miR-421 MIMAT0006319 Macaca mulatta miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>dme-miR-987-3p MIMAT0020885 Drosophila melanogaster miR-987-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>mmu-miR-421-3p MIMAT0004869 Mus musculus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>hsa-miR-421 MIMAT0003339 Homo sapiens miR-421
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
>rno-miR-421-3p MIMAT0017175 Rattus norvegicus miR-421-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcaaca 7
|||||||
Sbjct: 1 atcaaca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 213
Number of extensions: 177
Number of successful extensions: 144
Number of sequences better than 100.0: 33
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 33
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)