BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k3_ 1_5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-23b-3p MIMAT0036857 Ophiophagus hannah miR-23b-3p 16 6.9
oha-miR-23a-3p MIMAT0036855 Ophiophagus hannah miR-23a-3p 16 6.9
tch-miR-23b-3p MIMAT0036520 Tupaia chinensis miR-23b-3p 16 6.9
chi-miR-23b-3p MIMAT0036089 Capra hircus miR-23b-3p 16 6.9
chi-miR-23a MIMAT0036087 Capra hircus miR-23a 16 6.9
ssa-miR-23b-3p MIMAT0032553 Salmo salar miR-23b-3p 16 6.9
ssa-miR-23a-3p MIMAT0032549 Salmo salar miR-23a-3p 16 6.9
hhi-miR-23a MIMAT0030360 Hippoglossus hippoglossus miR-23a 16 6.9
oar-miR-23b MIMAT0030049 Ovis aries miR-23b 16 6.9
oar-miR-23a MIMAT0030048 Ovis aries miR-23a 16 6.9
ipu-miR-23b MIMAT0029482 Ictalurus punctatus miR-23b 16 6.9
ipu-miR-23a MIMAT0029481 Ictalurus punctatus miR-23a 16 6.9
ccr-miR-23b MIMAT0026278 Cyprinus carpio miR-23b 16 6.9
ccr-miR-23a MIMAT0026277 Cyprinus carpio miR-23a 16 6.9
ggo-miR-23c MIMAT0024244 Gorilla gorilla miR-23c 16 6.9
ggo-miR-23b MIMAT0024095 Gorilla gorilla miR-23b 16 6.9
ptr-miR-23c MIMAT0024048 Pan troglodytes miR-23c 16 6.9
cgr-miR-23b-3p MIMAT0023865 Cricetulus griseus miR-23b-3p 16 6.9
cgr-miR-23a-3p MIMAT0023863 Cricetulus griseus miR-23a-3p 16 6.9
sha-miR-23b MIMAT0022788 Sarcophilus harrisii miR-23b 16 6.9
sha-miR-23a MIMAT0022786 Sarcophilus harrisii miR-23a 16 6.9
ola-miR-23b MIMAT0022588 Oryzias latipes miR-23b 16 6.9
ola-miR-23a MIMAT0022583 Oryzias latipes miR-23a 16 6.9
aca-miR-23b-3p MIMAT0021898 Anolis carolinensis miR-23b-3p 16 6.9
aca-miR-23a-3p MIMAT0021896 Anolis carolinensis miR-23a-3p 16 6.9
pma-miR-23b MIMAT0019404 Petromyzon marinus miR-23b 16 6.9
pma-miR-23a-3p MIMAT0019403 Petromyzon marinus miR-23a-3p 16 6.9
hsa-miR-23c MIMAT0018000 Homo sapiens miR-23c 16 6.9
tgu-miR-23-3p MIMAT0014566 Taeniopygia guttata miR-23-3p 16 6.9
ssc-miR-23b MIMAT0013893 Sus scrofa miR-23b 16 6.9
eca-miR-23b MIMAT0013113 Equus caballus miR-23b 16 6.9
eca-miR-23a MIMAT0012986 Equus caballus miR-23a 16 6.9
xla-miR-23a MIMAT0011145 Xenopus laevis miR-23a 16 6.9
cfa-miR-23a MIMAT0006640 Canis familiaris miR-23a 16 6.9
cfa-miR-23b MIMAT0006612 Canis familiaris miR-23b 16 6.9
mml-miR-23b-3p MIMAT0006165 Macaca mulatta miR-23b-3p 16 6.9
oan-miR-23a-3p MIMAT0007061 Ornithorhynchus anatinus miR-23a-3p 16 6.9
oan-miR-23b-3p MIMAT0006959 Ornithorhynchus anatinus miR-23b-3p 16 6.9
mdo-miR-23b-3p MIMAT0004176 Monodelphis domestica miR-23b-3p 16 6.9
mdo-miR-23a-3p MIMAT0004173 Monodelphis domestica miR-23a-3p 16 6.9
bta-miR-23b-3p MIMAT0003852 Bos taurus miR-23b-3p 16 6.9
bta-miR-23a MIMAT0003827 Bos taurus miR-23a 16 6.9
xtr-miR-23b MIMAT0003673 Xenopus tropicalis miR-23b 16 6.9
xtr-miR-23a MIMAT0003568 Xenopus tropicalis miR-23a 16 6.9
tni-miR-23b MIMAT0002954 Tetraodon nigroviridis miR-23b 16 6.9
fru-miR-23b MIMAT0002953 Fugu rubripes miR-23b 16 6.9
tni-miR-23a MIMAT0002913 Tetraodon nigroviridis miR-23a 16 6.9
fru-miR-23a MIMAT0002912 Fugu rubripes miR-23a 16 6.9
mne-miR-23a MIMAT0002756 Macaca nemestrina miR-23a 16 6.9
sla-miR-23a MIMAT0002754 Saguinus labiatus miR-23a 16 6.9
mml-miR-23a-3p MIMAT0002752 Macaca mulatta miR-23a-3p 16 6.9
ptr-miR-23a MIMAT0002749 Pan troglodytes miR-23a 16 6.9
ppy-miR-23a MIMAT0002747 Pongo pygmaeus miR-23a 16 6.9
lca-miR-23a MIMAT0002745 Lemur catta miR-23a 16 6.9
ppa-miR-23a MIMAT0002743 Pan paniscus miR-23a 16 6.9
age-miR-23a MIMAT0002741 Ateles geoffroyi miR-23a 16 6.9
ggo-miR-23a MIMAT0002738 Gorilla gorilla miR-23a 16 6.9
ppa-miR-23b MIMAT0002212 Pan paniscus miR-23b 16 6.9
ppy-miR-23b MIMAT0002211 Pongo pygmaeus miR-23b 16 6.9
ptr-miR-23b MIMAT0002210 Pan troglodytes miR-23b 16 6.9
ssc-miR-23a MIMAT0002133 Sus scrofa miR-23a 16 6.9
dre-miR-23b MIMAT0001791 Danio rerio miR-23b 16 6.9
dre-miR-23a-3p MIMAT0001790 Danio rerio miR-23a-3p 16 6.9
gga-miR-23b-3p MIMAT0001186 Gallus gallus miR-23b-3p 16 6.9
rno-miR-23b-3p MIMAT0000793 Rattus norvegicus miR-23b-3p 16 6.9
rno-miR-23a-3p MIMAT0000792 Rattus norvegicus miR-23a-3p 16 6.9
mmu-miR-23a-3p MIMAT0000532 Mus musculus miR-23a-3p 16 6.9
hsa-miR-23b-3p MIMAT0000418 Homo sapiens miR-23b-3p 16 6.9
mmu-miR-23b-3p MIMAT0000125 Mus musculus miR-23b-3p 16 6.9
hsa-miR-23a-3p MIMAT0000078 Homo sapiens miR-23a-3p 16 6.9
efu-miR-23a MIMAT0035161 Eptesicus fuscus miR-23a 14 27
efu-miR-23b MIMAT0034899 Eptesicus fuscus miR-23b 14 27
ppc-miR-8323-3p MIMAT0033191 Pristionchus pacificus miR-8323-3p 14 27
hsa-miR-8070 MIMAT0030997 Homo sapiens miR-8070 14 27
hsa-miR-8066 MIMAT0030993 Homo sapiens miR-8066 14 27
prd-miR-7879-5p MIMAT0030514 Panagrellus redivivus miR-7879-5p 14 27
rno-miR-6329 MIMAT0025068 Rattus norvegicus miR-6329 14 27
tca-miR-3805a-5p MIMAT0018632 Tribolium castaneum miR-3805a-5p 14 27
aly-miR4232 MIMAT0017921 Arabidopsis lyrata miR4232 14 27
mtr-miR2607 MIMAT0013313 Medicago truncatula miR2607 14 27
ptc-miR1444c MIMAT0006001 Populus trichocarpa miR1444c 14 27
ptc-miR1444b MIMAT0006000 Populus trichocarpa miR1444b 14 27
kshv-miR-K12-3-5p MIMAT0002193 Kaposi sarcoma-associated miR-K12... 14 27
mghv-miR-M1-9 MIMAT0001573 Mouse gammaherpesvirus miR-M1-9 14 27
osa-miR418 MIMAT0001334 Oryza sativa miR418 14 27
ath-miR418 MIMAT0001326 Arabidopsis thaliana miR418 14 27
hsa-miR-130a-5p MIMAT0004593 Homo sapiens miR-130a-5p 14 27
>oha-miR-23b-3p MIMAT0036857 Ophiophagus hannah miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>oha-miR-23a-3p MIMAT0036855 Ophiophagus hannah miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>tch-miR-23b-3p MIMAT0036520 Tupaia chinensis miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>chi-miR-23b-3p MIMAT0036089 Capra hircus miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>chi-miR-23a MIMAT0036087 Capra hircus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ssa-miR-23b-3p MIMAT0032553 Salmo salar miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ssa-miR-23a-3p MIMAT0032549 Salmo salar miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>hhi-miR-23a MIMAT0030360 Hippoglossus hippoglossus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>oar-miR-23b MIMAT0030049 Ovis aries miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>oar-miR-23a MIMAT0030048 Ovis aries miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ipu-miR-23b MIMAT0029482 Ictalurus punctatus miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ipu-miR-23a MIMAT0029481 Ictalurus punctatus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ccr-miR-23b MIMAT0026278 Cyprinus carpio miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ccr-miR-23a MIMAT0026277 Cyprinus carpio miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ggo-miR-23c MIMAT0024244 Gorilla gorilla miR-23c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ggo-miR-23b MIMAT0024095 Gorilla gorilla miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ptr-miR-23c MIMAT0024048 Pan troglodytes miR-23c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>cgr-miR-23b-3p MIMAT0023865 Cricetulus griseus miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>cgr-miR-23a-3p MIMAT0023863 Cricetulus griseus miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>sha-miR-23b MIMAT0022788 Sarcophilus harrisii miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>sha-miR-23a MIMAT0022786 Sarcophilus harrisii miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ola-miR-23b MIMAT0022588 Oryzias latipes miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ola-miR-23a MIMAT0022583 Oryzias latipes miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>aca-miR-23b-3p MIMAT0021898 Anolis carolinensis miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>aca-miR-23a-3p MIMAT0021896 Anolis carolinensis miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>pma-miR-23b MIMAT0019404 Petromyzon marinus miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>pma-miR-23a-3p MIMAT0019403 Petromyzon marinus miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>hsa-miR-23c MIMAT0018000 Homo sapiens miR-23c
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>tgu-miR-23-3p MIMAT0014566 Taeniopygia guttata miR-23-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ssc-miR-23b MIMAT0013893 Sus scrofa miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>eca-miR-23b MIMAT0013113 Equus caballus miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>eca-miR-23a MIMAT0012986 Equus caballus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>xla-miR-23a MIMAT0011145 Xenopus laevis miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>cfa-miR-23a MIMAT0006640 Canis familiaris miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>cfa-miR-23b MIMAT0006612 Canis familiaris miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>mml-miR-23b-3p MIMAT0006165 Macaca mulatta miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>oan-miR-23a-3p MIMAT0007061 Ornithorhynchus anatinus miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>oan-miR-23b-3p MIMAT0006959 Ornithorhynchus anatinus miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>mdo-miR-23b-3p MIMAT0004176 Monodelphis domestica miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>mdo-miR-23a-3p MIMAT0004173 Monodelphis domestica miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>bta-miR-23b-3p MIMAT0003852 Bos taurus miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>bta-miR-23a MIMAT0003827 Bos taurus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>xtr-miR-23b MIMAT0003673 Xenopus tropicalis miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>xtr-miR-23a MIMAT0003568 Xenopus tropicalis miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>tni-miR-23b MIMAT0002954 Tetraodon nigroviridis miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>fru-miR-23b MIMAT0002953 Fugu rubripes miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>tni-miR-23a MIMAT0002913 Tetraodon nigroviridis miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>fru-miR-23a MIMAT0002912 Fugu rubripes miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>mne-miR-23a MIMAT0002756 Macaca nemestrina miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>sla-miR-23a MIMAT0002754 Saguinus labiatus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>mml-miR-23a-3p MIMAT0002752 Macaca mulatta miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ptr-miR-23a MIMAT0002749 Pan troglodytes miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ppy-miR-23a MIMAT0002747 Pongo pygmaeus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>lca-miR-23a MIMAT0002745 Lemur catta miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ppa-miR-23a MIMAT0002743 Pan paniscus miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>age-miR-23a MIMAT0002741 Ateles geoffroyi miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ggo-miR-23a MIMAT0002738 Gorilla gorilla miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ppa-miR-23b MIMAT0002212 Pan paniscus miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ppy-miR-23b MIMAT0002211 Pongo pygmaeus miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ptr-miR-23b MIMAT0002210 Pan troglodytes miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>ssc-miR-23a MIMAT0002133 Sus scrofa miR-23a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>dre-miR-23b MIMAT0001791 Danio rerio miR-23b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>dre-miR-23a-3p MIMAT0001790 Danio rerio miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>gga-miR-23b-3p MIMAT0001186 Gallus gallus miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>rno-miR-23b-3p MIMAT0000793 Rattus norvegicus miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>rno-miR-23a-3p MIMAT0000792 Rattus norvegicus miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>mmu-miR-23a-3p MIMAT0000532 Mus musculus miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>hsa-miR-23b-3p MIMAT0000418 Homo sapiens miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>mmu-miR-23b-3p MIMAT0000125 Mus musculus miR-23b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>hsa-miR-23a-3p MIMAT0000078 Homo sapiens miR-23a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcacatt 8
||||||||
Sbjct: 1 atcacatt 8
>efu-miR-23a MIMAT0035161 Eptesicus fuscus miR-23a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcacat 7
|||||||
Sbjct: 2 atcacat 8
>efu-miR-23b MIMAT0034899 Eptesicus fuscus miR-23b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcacat 7
|||||||
Sbjct: 2 atcacat 8
>ppc-miR-8323-3p MIMAT0033191 Pristionchus pacificus miR-8323-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacatt 8
|||||||
Sbjct: 2 tcacatt 8
>hsa-miR-8070 MIMAT0030997 Homo sapiens miR-8070
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcacat 7
|||||||
Sbjct: 7 atcacat 1
>hsa-miR-8066 MIMAT0030993 Homo sapiens miR-8066
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacatt 8
|||||||
Sbjct: 8 tcacatt 2
>prd-miR-7879-5p MIMAT0030514 Panagrellus redivivus miR-7879-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacatt 8
|||||||
Sbjct: 7 tcacatt 1
>rno-miR-6329 MIMAT0025068 Rattus norvegicus miR-6329
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacatt 8
|||||||
Sbjct: 7 tcacatt 1
>tca-miR-3805a-5p MIMAT0018632 Tribolium castaneum miR-3805a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcacat 7
|||||||
Sbjct: 2 atcacat 8
>aly-miR4232 MIMAT0017921 Arabidopsis lyrata miR4232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacatt 8
|||||||
Sbjct: 1 tcacatt 7
>mtr-miR2607 MIMAT0013313 Medicago truncatula miR2607
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcacat 7
|||||||
Sbjct: 7 atcacat 1
>ptc-miR1444c MIMAT0006001 Populus trichocarpa miR1444c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacatt 8
|||||||
Sbjct: 2 tcacatt 8
>ptc-miR1444b MIMAT0006000 Populus trichocarpa miR1444b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacatt 8
|||||||
Sbjct: 2 tcacatt 8
>kshv-miR-K12-3-5p MIMAT0002193 Kaposi sarcoma-associated
miR-K12-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacatt 8
|||||||
Sbjct: 1 tcacatt 7
>mghv-miR-M1-9 MIMAT0001573 Mouse gammaherpesvirus miR-M1-9
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacatt 8
|||||||
Sbjct: 1 tcacatt 7
>osa-miR418 MIMAT0001334 Oryza sativa miR418
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacatt 8
|||||||
Sbjct: 8 tcacatt 2
>ath-miR418 MIMAT0001326 Arabidopsis thaliana miR418
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacatt 8
|||||||
Sbjct: 8 tcacatt 2
>hsa-miR-130a-5p MIMAT0004593 Homo sapiens miR-130a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcacatt 8
|||||||
Sbjct: 2 tcacatt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 623
Number of extensions: 466
Number of successful extensions: 211
Number of sequences better than 100.0: 87
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 87
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
