BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv38-miR-h1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bmo-miR-2843-2-3p MIMAT0015307 Bombyx mori miR-2843-2-3p 16 6.9
eca-miR-9068 MIMAT0034613 Equus caballus miR-9068 14 27
gra-miR7494f MIMAT0034174 Gossypium raimondii miR7494f 14 27
gra-miR7494e MIMAT0034173 Gossypium raimondii miR7494e 14 27
sma-miR-8426-3p MIMAT0033557 Schistosoma mansoni miR-8426-3p 14 27
stu-miR8011b-3p MIMAT0030950 Solanum tuberosum miR8011b-3p 14 27
hco-miR-5967 MIMAT0023474 Haemonchus contortus miR-5967 14 27
>bmo-miR-2843-2-3p MIMAT0015307 Bombyx mori miR-2843-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcacgaa 8
||||||||
Sbjct: 8 atcacgaa 1
>eca-miR-9068 MIMAT0034613 Equus caballus miR-9068
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcacga 7
|||||||
Sbjct: 8 atcacga 2
>gra-miR7494f MIMAT0034174 Gossypium raimondii miR7494f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcacga 7
|||||||
Sbjct: 7 atcacga 1
>gra-miR7494e MIMAT0034173 Gossypium raimondii miR7494e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcacga 7
|||||||
Sbjct: 7 atcacga 1
>sma-miR-8426-3p MIMAT0033557 Schistosoma mansoni miR-8426-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcacga 7
|||||||
Sbjct: 8 atcacga 2
>stu-miR8011b-3p MIMAT0030950 Solanum tuberosum miR8011b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacgaa 8
|||||||
Sbjct: 7 tcacgaa 1
>hco-miR-5967 MIMAT0023474 Haemonchus contortus miR-5967
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcacgaa 8
|||||||
Sbjct: 8 tcacgaa 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 59
Number of extensions: 51
Number of successful extensions: 45
Number of sequences better than 100.0: 7
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
