BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-13-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-376b-3p MIMAT0036609 Tupaia chinensis miR-376b-3p 14 20
tch-miR-376a-3p MIMAT0036537 Tupaia chinensis miR-376a-3p 14 20
chi-miR-376d MIMAT0036189 Capra hircus miR-376d 14 20
chi-miR-376b-3p MIMAT0036186 Capra hircus miR-376b-3p 14 20
ggo-miR-376b MIMAT0024193 Gorilla gorilla miR-376b 14 20
ggo-miR-376a MIMAT0024159 Gorilla gorilla miR-376a 14 20
oar-miR-376a-3p MIMAT0019287 Ovis aries miR-376a-3p 14 20
oar-miR-376b-3p MIMAT0019285 Ovis aries miR-376b-3p 14 20
oar-miR-376d MIMAT0019281 Ovis aries miR-376d 14 20
ppy-miR-376b MIMAT0015865 Pongo pygmaeus miR-376b 14 20
ppy-miR-376a MIMAT0015864 Pongo pygmaeus miR-376a 14 20
ssc-miR-376a-3p MIMAT0015716 Sus scrofa miR-376a-3p 14 20
eca-miR-376b MIMAT0013144 Equus caballus miR-376b 14 20
eca-miR-376a MIMAT0013143 Equus caballus miR-376a 14 20
bmo-miR-2841 MIMAT0013758 Bombyx mori miR-2841 14 20
bta-miR-376a MIMAT0009946 Bos taurus miR-376a 14 20
bta-miR-376d MIMAT0010199 Bos taurus miR-376d 14 20
bta-miR-376b MIMAT0009945 Bos taurus miR-376b 14 20
cfa-miR-376b MIMAT0009887 Canis familiaris miR-376b 14 20
ptr-miR-376b MIMAT0008127 Pan troglodytes miR-376b 14 20
ptr-miR-376a MIMAT0008126 Pan troglodytes miR-376a 14 20
cfa-miR-376a MIMAT0006722 Canis familiaris miR-376a 14 20
mml-miR-376b-3p MIMAT0006304 Macaca mulatta miR-376b-3p 14 20
mml-miR-376a-3p MIMAT0006303 Macaca mulatta miR-376a-3p 14 20
rlcv-miR-rL1-13-3p MIMAT0003443 Rhesus lymphocryptovirus miR-rL1... 14 20
ebv-miR-BART7-3p MIMAT0003416 Epstein Barr miR-BART7-3p 14 20
rno-miR-376b-3p MIMAT0003196 Rattus norvegicus miR-376b-3p 14 20
hsa-miR-376b-3p MIMAT0002172 Homo sapiens miR-376b-3p 14 20
mmu-miR-376b-3p MIMAT0001092 Mus musculus miR-376b-3p 14 20
hsa-miR-376a-3p MIMAT0000729 Homo sapiens miR-376a-3p 14 20
tch-miR-539-3p MIMAT0036505 Tupaia chinensis miR-539-3p 12 80
chi-miR-154b-3p MIMAT0035987 Capra hircus miR-154b-3p 12 80
tae-miR9675-3p MIMAT0035798 Triticum aestivum miR9675-3p 12 80
cfa-miR-507a MIMAT0034432 Canis familiaris miR-507a 12 80
cfa-miR-8820 MIMAT0034310 Canis familiaris miR-8820 12 80
gra-miR166c MIMAT0034156 Gossypium raimondii miR166c 12 80
pxy-miR-8527 MIMAT0033769 Plutella xylostella miR-8527 12 80
ppc-miR-8354-5p MIMAT0033268 Pristionchus pacificus miR-8354-5p 12 80
ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p 12 80
ppc-miR-8282a-3p MIMAT0033068 Pristionchus pacificus miR-8282a-3p 12 80
stu-miR4376-3p MIMAT0031275 Solanum tuberosum miR4376-3p 12 80
stu-miR8046-5p MIMAT0030961 Solanum tuberosum miR8046-5p 12 80
ptc-miR7820 MIMAT0030380 Populus trichocarpa miR7820 12 80
mdo-miR-7359b-3p MIMAT0031049 Monodelphis domestica miR-7359b-3p 12 80
mdo-miR-7359a-3p MIMAT0028731 Monodelphis domestica miR-7359a-3p 12 80
mdo-miR-7300-3p MIMAT0028593 Monodelphis domestica miR-7300-3p 12 80
nta-miR6145b MIMAT0024753 Nicotiana tabacum miR6145b 12 80
hco-miR-63b MIMAT0023440 Haemonchus contortus miR-63b 12 80
gma-miR5762 MIMAT0023158 Glycine max miR5762 12 80
ath-miR5633 MIMAT0022393 Arabidopsis thaliana miR5633 12 80
hsa-miR-5007-3p MIMAT0021036 Homo sapiens miR-5007-3p 12 80
oar-miR-487a-3p MIMAT0019305 Ovis aries miR-487a-3p 12 80
tca-miR-3805b-3p MIMAT0018663 Tribolium castaneum miR-3805b-3p 12 80
tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p 12 80
cin-miR-4088-5p MIMAT0016664 Ciona intestinalis miR-4088-5p 12 80
cin-miR-4054-5p MIMAT0016597 Ciona intestinalis miR-4054-5p 12 80
cin-miR-4026-3p MIMAT0016543 Ciona intestinalis miR-4026-3p 12 80
bmo-miR-3276 MIMAT0015461 Bombyx mori miR-3276 12 80
gga-miR-1725 MIMAT0007624 Gallus gallus miR-1725 12 80
hsa-miR-103b MIMAT0007402 Homo sapiens miR-103b 12 80
osa-miR1442 MIMAT0005992 Oryza sativa miR1442 12 80
ppt-miR902g-5p MIMAT0005077 Physcomitrella patens miR902g-5p 12 80
ppt-miR902f-5p MIMAT0005075 Physcomitrella patens miR902f-5p 12 80
ppt-miR902e-5p MIMAT0005073 Physcomitrella patens miR902e-5p 12 80
ppt-miR902d-5p MIMAT0005071 Physcomitrella patens miR902d-5p 12 80
ppt-miR902c-5p MIMAT0005069 Physcomitrella patens miR902c-5p 12 80
ppt-miR902b-5p MIMAT0004963 Physcomitrella patens miR902b-5p 12 80
ppt-miR902a-5p MIMAT0004962 Physcomitrella patens miR902a-5p 12 80
sme-miR-277c-5p MIMAT0012120 Schmidtea mediterranea miR-277c-5p 12 80
ppt-miR1214 MIMAT0003903 Physcomitrella patens miR1214 12 80
hsa-miR-539-3p MIMAT0022705 Homo sapiens miR-539-3p 12 80
hcmv-miR-US5-2-3p MIMAT0001580 Human cytomegalovirus miR-US5-2-3p 12 80
>tch-miR-376b-3p MIMAT0036609 Tupaia chinensis miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>tch-miR-376a-3p MIMAT0036537 Tupaia chinensis miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>chi-miR-376d MIMAT0036189 Capra hircus miR-376d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>chi-miR-376b-3p MIMAT0036186 Capra hircus miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>ggo-miR-376b MIMAT0024193 Gorilla gorilla miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>ggo-miR-376a MIMAT0024159 Gorilla gorilla miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>oar-miR-376a-3p MIMAT0019287 Ovis aries miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>oar-miR-376b-3p MIMAT0019285 Ovis aries miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>oar-miR-376d MIMAT0019281 Ovis aries miR-376d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>ppy-miR-376b MIMAT0015865 Pongo pygmaeus miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>ppy-miR-376a MIMAT0015864 Pongo pygmaeus miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>ssc-miR-376a-3p MIMAT0015716 Sus scrofa miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>eca-miR-376b MIMAT0013144 Equus caballus miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>eca-miR-376a MIMAT0013143 Equus caballus miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>bmo-miR-2841 MIMAT0013758 Bombyx mori miR-2841
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>bta-miR-376a MIMAT0009946 Bos taurus miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>bta-miR-376d MIMAT0010199 Bos taurus miR-376d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>bta-miR-376b MIMAT0009945 Bos taurus miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>cfa-miR-376b MIMAT0009887 Canis familiaris miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>ptr-miR-376b MIMAT0008127 Pan troglodytes miR-376b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>ptr-miR-376a MIMAT0008126 Pan troglodytes miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>cfa-miR-376a MIMAT0006722 Canis familiaris miR-376a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>mml-miR-376b-3p MIMAT0006304 Macaca mulatta miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>mml-miR-376a-3p MIMAT0006303 Macaca mulatta miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>rlcv-miR-rL1-13-3p MIMAT0003443 Rhesus lymphocryptovirus
miR-rL1-13-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 2 atcatag 8
>ebv-miR-BART7-3p MIMAT0003416 Epstein Barr miR-BART7-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 2 atcatag 8
>rno-miR-376b-3p MIMAT0003196 Rattus norvegicus miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>hsa-miR-376b-3p MIMAT0002172 Homo sapiens miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>mmu-miR-376b-3p MIMAT0001092 Mus musculus miR-376b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>hsa-miR-376a-3p MIMAT0000729 Homo sapiens miR-376a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcatag 7
|||||||
Sbjct: 1 atcatag 7
>tch-miR-539-3p MIMAT0036505 Tupaia chinensis miR-539-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>chi-miR-154b-3p MIMAT0035987 Capra hircus miR-154b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>tae-miR9675-3p MIMAT0035798 Triticum aestivum miR9675-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 8 atcata 3
>cfa-miR-507a MIMAT0034432 Canis familiaris miR-507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>cfa-miR-8820 MIMAT0034310 Canis familiaris miR-8820
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatag 7
||||||
Sbjct: 1 tcatag 6
>gra-miR166c MIMAT0034156 Gossypium raimondii miR166c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 8 atcata 3
>pxy-miR-8527 MIMAT0033769 Plutella xylostella miR-8527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatag 7
||||||
Sbjct: 6 tcatag 1
>ppc-miR-8354-5p MIMAT0033268 Pristionchus pacificus miR-8354-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 8 atcata 3
>ppc-miR-8282a-3p MIMAT0033068 Pristionchus pacificus
miR-8282a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>stu-miR4376-3p MIMAT0031275 Solanum tuberosum miR4376-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 3 atcata 8
>stu-miR8046-5p MIMAT0030961 Solanum tuberosum miR8046-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ptc-miR7820 MIMAT0030380 Populus trichocarpa miR7820
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>mdo-miR-7359b-3p MIMAT0031049 Monodelphis domestica
miR-7359b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatag 7
||||||
Sbjct: 1 tcatag 6
>mdo-miR-7359a-3p MIMAT0028731 Monodelphis domestica
miR-7359a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatag 7
||||||
Sbjct: 1 tcatag 6
>mdo-miR-7300-3p MIMAT0028593 Monodelphis domestica miR-7300-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatag 7
||||||
Sbjct: 1 tcatag 6
>nta-miR6145b MIMAT0024753 Nicotiana tabacum miR6145b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 3 atcata 8
>hco-miR-63b MIMAT0023440 Haemonchus contortus miR-63b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatag 7
||||||
Sbjct: 6 tcatag 1
>gma-miR5762 MIMAT0023158 Glycine max miR5762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatag 7
||||||
Sbjct: 1 tcatag 6
>ath-miR5633 MIMAT0022393 Arabidopsis thaliana miR5633
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>hsa-miR-5007-3p MIMAT0021036 Homo sapiens miR-5007-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>oar-miR-487a-3p MIMAT0019305 Ovis aries miR-487a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>tca-miR-3805b-3p MIMAT0018663 Tribolium castaneum miR-3805b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>cin-miR-4088-5p MIMAT0016664 Ciona intestinalis miR-4088-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatag 7
||||||
Sbjct: 8 tcatag 3
>cin-miR-4054-5p MIMAT0016597 Ciona intestinalis miR-4054-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>cin-miR-4026-3p MIMAT0016543 Ciona intestinalis miR-4026-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatag 7
||||||
Sbjct: 7 tcatag 2
>bmo-miR-3276 MIMAT0015461 Bombyx mori miR-3276
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>gga-miR-1725 MIMAT0007624 Gallus gallus miR-1725
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>hsa-miR-103b MIMAT0007402 Homo sapiens miR-103b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatag 7
||||||
Sbjct: 1 tcatag 6
>osa-miR1442 MIMAT0005992 Oryza sativa miR1442
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcatag 7
||||||
Sbjct: 3 tcatag 8
>ppt-miR902g-5p MIMAT0005077 Physcomitrella patens miR902g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ppt-miR902f-5p MIMAT0005075 Physcomitrella patens miR902f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ppt-miR902e-5p MIMAT0005073 Physcomitrella patens miR902e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ppt-miR902d-5p MIMAT0005071 Physcomitrella patens miR902d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ppt-miR902c-5p MIMAT0005069 Physcomitrella patens miR902c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ppt-miR902b-5p MIMAT0004963 Physcomitrella patens miR902b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>ppt-miR902a-5p MIMAT0004962 Physcomitrella patens miR902a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
>sme-miR-277c-5p MIMAT0012120 Schmidtea mediterranea miR-277c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>ppt-miR1214 MIMAT0003903 Physcomitrella patens miR1214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcatag 7
||||||
Sbjct: 8 tcatag 3
>hsa-miR-539-3p MIMAT0022705 Homo sapiens miR-539-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcata 6
||||||
Sbjct: 1 atcata 6
>hcmv-miR-US5-2-3p MIMAT0001580 Human cytomegalovirus
miR-US5-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcata 6
||||||
Sbjct: 6 atcata 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 134
Number of extensions: 104
Number of successful extensions: 72
Number of sequences better than 100.0: 72
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 72
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
