BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us25-2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hcmv-miR-US25-2-3p MIMAT0001583 Human cytomegalovirus miR-US25-2-3p 16 6.9
ssc-miR-9798-3p MIMAT0037016 Sus scrofa miR-9798-3p 14 27
ssc-miR-9792-5p MIMAT0037010 Sus scrofa miR-9792-5p 14 27
atr-miR8560 MIMAT0033833 Amborella trichopoda miR8560 14 27
prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p 14 27
mmu-miR-7651-5p MIMAT0029804 Mus musculus miR-7651-5p 14 27
hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p 14 27
hme-miR-1175 MIMAT0024935 Heliconius melpomene miR-1175 14 27
ppe-miR6263 MIMAT0027280 Prunus persica miR6263 14 27
asu-miR-1175-5p MIMAT0021533 Ascaris suum miR-1175-5p 14 27
asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p 14 27
hsa-miR-4436b-5p MIMAT0019940 Homo sapiens miR-4436b-5p 14 27
tca-miR-1175-5p MIMAT0018818 Tribolium castaneum miR-1175-5p 14 27
hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p 14 27
hsa-miR-3681-5p MIMAT0018108 Homo sapiens miR-3681-5p 14 27
cqu-miR-1175-5p MIMAT0014390 Culex quinquefasciatus miR-1175-5p 14 27
aae-miR-1175-5p MIMAT0014264 Aedes aegypti miR-1175-5p 14 27
bmo-miR-1175-5p MIMAT0013612 Bombyx mori miR-1175-5p 14 27
cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p 14 27
>hcmv-miR-US25-2-3p MIMAT0001583 Human cytomegalovirus
miR-US25-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atccactt 8
||||||||
Sbjct: 1 atccactt 8
>ssc-miR-9798-3p MIMAT0037016 Sus scrofa miR-9798-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccact 7
|||||||
Sbjct: 8 atccact 2
>ssc-miR-9792-5p MIMAT0037010 Sus scrofa miR-9792-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 8 tccactt 2
>atr-miR8560 MIMAT0033833 Amborella trichopoda miR8560
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccactt 8
|||||||
Sbjct: 1 tccactt 7
>prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccact 7
|||||||
Sbjct: 7 atccact 1
>mmu-miR-7651-5p MIMAT0029804 Mus musculus miR-7651-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccact 7
|||||||
Sbjct: 8 atccact 2
>hme-miR-1175 MIMAT0024935 Heliconius melpomene miR-1175
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>ppe-miR6263 MIMAT0027280 Prunus persica miR6263
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>asu-miR-1175-5p MIMAT0021533 Ascaris suum miR-1175-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccact 7
|||||||
Sbjct: 7 atccact 1
>hsa-miR-4436b-5p MIMAT0019940 Homo sapiens miR-4436b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccactt 8
|||||||
Sbjct: 2 tccactt 8
>tca-miR-1175-5p MIMAT0018818 Tribolium castaneum miR-1175-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccact 7
|||||||
Sbjct: 7 atccact 1
>hsa-miR-3681-5p MIMAT0018108 Homo sapiens miR-3681-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccact 7
|||||||
Sbjct: 8 atccact 2
>cqu-miR-1175-5p MIMAT0014390 Culex quinquefasciatus miR-1175-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>aae-miR-1175-5p MIMAT0014264 Aedes aegypti miR-1175-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>bmo-miR-1175-5p MIMAT0013612 Bombyx mori miR-1175-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccactt 8
|||||||
Sbjct: 7 tccactt 1
>cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccact 7
|||||||
Sbjct: 7 atccact 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 174
Number of extensions: 154
Number of successful extensions: 126
Number of sequences better than 100.0: 19
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
