BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m16
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv2-miR-M16-5p MIMAT0004455 Mareks disease miR-M16-5p 16 6.9
ata-miR319-3p MIMAT0037245 Aegilops tauschii miR319-3p 14 27
chi-miR-432-3p MIMAT0036228 Capra hircus miR-432-3p 14 27
sly-miR9479-5p MIMAT0035477 Solanum lycopersicum miR9479-5p 14 27
eca-miR-8908h MIMAT0034710 Equus caballus miR-8908h 14 27
eca-miR-8912 MIMAT0034440 Equus caballus miR-8912 14 27
ppc-miR-8271-3p MIMAT0033036 Pristionchus pacificus miR-8271-3p 14 27
prd-miR-7940c-3p MIMAT0030537 Panagrellus redivivus miR-7940c-3p 14 27
mmu-miR-6947-5p MIMAT0027794 Mus musculus miR-6947-5p 14 27
mml-miR-378j MIMAT0024621 Macaca mulatta miR-378j 14 27
hsa-miR-378j MIMAT0024612 Homo sapiens miR-378j 14 27
ptr-miR-378j MIMAT0024602 Pan troglodytes miR-378j 14 27
asu-miR-44b-5p MIMAT0021564 Ascaris suum miR-44b-5p 14 27
hsa-miR-5195-3p MIMAT0021127 Homo sapiens miR-5195-3p 14 27
pma-miR-4629 MIMAT0019663 Petromyzon marinus miR-4629 14 27
hsa-miR-3654 MIMAT0018074 Homo sapiens miR-3654 14 27
mmu-miR-3081-5p MIMAT0014870 Mus musculus miR-3081-5p 14 27
bta-miR-2299-5p MIMAT0011807 Bos taurus miR-2299-5p 14 27
hsa-miR-1243 MIMAT0005894 Homo sapiens miR-1243 14 27
osa-miR319a-3p MIMAT0020915 Oryza sativa miR319a-3p 14 27
rno-miR-336-3p MIMAT0017034 Rattus norvegicus miR-336-3p 14 27
>mdv2-miR-M16-5p MIMAT0004455 Mareks disease miR-M16-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atccagtc 8
||||||||
Sbjct: 1 atccagtc 8
>ata-miR319-3p MIMAT0037245 Aegilops tauschii miR319-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>chi-miR-432-3p MIMAT0036228 Capra hircus miR-432-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>sly-miR9479-5p MIMAT0035477 Solanum lycopersicum miR9479-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccagtc 8
|||||||
Sbjct: 1 tccagtc 7
>eca-miR-8908h MIMAT0034710 Equus caballus miR-8908h
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atccagt 7
|||||||
Sbjct: 2 atccagt 8
>eca-miR-8912 MIMAT0034440 Equus caballus miR-8912
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccagtc 8
|||||||
Sbjct: 2 tccagtc 8
>ppc-miR-8271-3p MIMAT0033036 Pristionchus pacificus miR-8271-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 8 atccagt 2
>prd-miR-7940c-3p MIMAT0030537 Panagrellus redivivus
miR-7940c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccagtc 8
|||||||
Sbjct: 8 tccagtc 2
>mmu-miR-6947-5p MIMAT0027794 Mus musculus miR-6947-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atccagt 7
|||||||
Sbjct: 2 atccagt 8
>mml-miR-378j MIMAT0024621 Macaca mulatta miR-378j
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>hsa-miR-378j MIMAT0024612 Homo sapiens miR-378j
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>ptr-miR-378j MIMAT0024602 Pan troglodytes miR-378j
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>asu-miR-44b-5p MIMAT0021564 Ascaris suum miR-44b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>hsa-miR-5195-3p MIMAT0021127 Homo sapiens miR-5195-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atccagt 7
|||||||
Sbjct: 1 atccagt 7
>pma-miR-4629 MIMAT0019663 Petromyzon marinus miR-4629
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccagtc 8
|||||||
Sbjct: 8 tccagtc 2
>hsa-miR-3654 MIMAT0018074 Homo sapiens miR-3654
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccagtc 8
|||||||
Sbjct: 7 tccagtc 1
>mmu-miR-3081-5p MIMAT0014870 Mus musculus miR-3081-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccagtc 8
|||||||
Sbjct: 7 tccagtc 1
>bta-miR-2299-5p MIMAT0011807 Bos taurus miR-2299-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>hsa-miR-1243 MIMAT0005894 Homo sapiens miR-1243
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 8 atccagt 2
>osa-miR319a-3p MIMAT0020915 Oryza sativa miR319a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
>rno-miR-336-3p MIMAT0017034 Rattus norvegicus miR-336-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccagt 7
|||||||
Sbjct: 7 atccagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 212
Number of extensions: 190
Number of successful extensions: 144
Number of sequences better than 100.0: 21
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
