BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s65
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950 14 27
str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p 14 27
stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p 14 27
stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035 14 27
stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p 14 27
bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon miR7717a-3p 14 27
mes-miR2950 MIMAT0029309 Manihot esculenta miR2950 14 27
hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p 14 27
gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p 14 27
pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548 14 27
vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p 14 27
aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p 14 27
bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206 14 27
hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134 14 27
dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527 14 27
bta-miR-2417 MIMAT0011981 Bos taurus miR-2417 14 27
mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969 14 27
ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p 14 27
sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p 14 27
rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p 14 27
>atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccatct 8
|||||||
Sbjct: 2 tccatct 8
>str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccatc 7
|||||||
Sbjct: 8 atccatc 2
>stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccatct 8
|||||||
Sbjct: 7 tccatct 1
>stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccatct 8
|||||||
Sbjct: 1 tccatct 7
>stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccatct 8
|||||||
Sbjct: 8 tccatct 2
>bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon
miR7717a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccatc 7
|||||||
Sbjct: 7 atccatc 1
>mes-miR2950 MIMAT0029309 Manihot esculenta miR2950
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccatct 8
|||||||
Sbjct: 2 tccatct 8
>hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atccatc 7
|||||||
Sbjct: 2 atccatc 8
>gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccatct 8
|||||||
Sbjct: 7 tccatct 1
>pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccatct 8
|||||||
Sbjct: 1 tccatct 7
>vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccatct 8
|||||||
Sbjct: 2 tccatct 8
>aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccatc 7
|||||||
Sbjct: 7 atccatc 1
>bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atccatc 7
|||||||
Sbjct: 2 atccatc 8
>hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccatc 7
|||||||
Sbjct: 8 atccatc 2
>dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccatc 7
|||||||
Sbjct: 8 atccatc 2
>bta-miR-2417 MIMAT0011981 Bos taurus miR-2417
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccatct 8
|||||||
Sbjct: 7 tccatct 1
>mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tccatct 8
|||||||
Sbjct: 8 tccatct 2
>ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atccatc 7
|||||||
Sbjct: 7 atccatc 1
>sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atccatc 7
|||||||
Sbjct: 2 atccatc 8
>rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tccatct 8
|||||||
Sbjct: 1 tccatct 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 139
Number of extensions: 119
Number of successful extensions: 92
Number of sequences better than 100.0: 20
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
