BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s63
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8337-3p MIMAT0033221 Pristionchus pacificus miR-8337-3p 14 27
nta-miR6158c MIMAT0024768 Nicotiana tabacum miR6158c 14 27
nta-miR6158b MIMAT0024767 Nicotiana tabacum miR6158b 14 27
nta-miR6158a MIMAT0024766 Nicotiana tabacum miR6158a 14 27
ame-miR-6039 MIMAT0023659 Apis mellifera miR-6039 14 27
osa-miR5818 MIMAT0023291 Oryza sativa miR5818 14 27
tur-miR-5729a-3p MIMAT0023055 Tetranychus urticae miR-5729a-3p 14 27
tur-miR-5729b-3p MIMAT0023039 Tetranychus urticae miR-5729b-3p 14 27
tca-miR-3847-5p MIMAT0018742 Tribolium castaneum miR-3847-5p 14 27
>ppc-miR-8337-3p MIMAT0033221 Pristionchus pacificus miR-8337-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcgaac 7
|||||||
Sbjct: 7 atcgaac 1
>nta-miR6158c MIMAT0024768 Nicotiana tabacum miR6158c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcgaact 8
|||||||
Sbjct: 8 tcgaact 2
>nta-miR6158b MIMAT0024767 Nicotiana tabacum miR6158b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcgaact 8
|||||||
Sbjct: 8 tcgaact 2
>nta-miR6158a MIMAT0024766 Nicotiana tabacum miR6158a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcgaact 8
|||||||
Sbjct: 8 tcgaact 2
>ame-miR-6039 MIMAT0023659 Apis mellifera miR-6039
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcgaac 7
|||||||
Sbjct: 2 atcgaac 8
>osa-miR5818 MIMAT0023291 Oryza sativa miR5818
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcgaact 8
|||||||
Sbjct: 1 tcgaact 7
>tur-miR-5729a-3p MIMAT0023055 Tetranychus urticae miR-5729a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcgaac 7
|||||||
Sbjct: 2 atcgaac 8
>tur-miR-5729b-3p MIMAT0023039 Tetranychus urticae miR-5729b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcgaac 7
|||||||
Sbjct: 2 atcgaac 8
>tca-miR-3847-5p MIMAT0018742 Tribolium castaneum miR-3847-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcgaact 8
|||||||
Sbjct: 2 tcgaact 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 48
Number of successful extensions: 42
Number of sequences better than 100.0: 9
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
