BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-8
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8 12 80
bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13 12 80
pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503 12 80
prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus miR-7950b-3p 12 80
prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus miR-7950a-3p 12 80
prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus miR-7950c-3p 12 80
bdi-miR7718-3p MIMAT0030159 Brachypodium distachyon miR7718-3p 12 80
mdo-miR-7327-3p MIMAT0028657 Monodelphis domestica miR-7327-3p 12 80
hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p 12 80
hsa-miR-6785-3p MIMAT0027471 Homo sapiens miR-6785-3p 12 80
ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012 12 80
tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p 12 80
dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster miR-4985-3p 12 80
cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935 12 80
pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597 12 80
tca-miR-3807-5p MIMAT0018636 Tribolium castaneum miR-3807-5p 12 80
vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p 12 80
esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p 12 80
bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748 12 80
dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p 12 80
dvi-miR-286-5p MIMAT0032074 Drosophila virilis miR-286-5p 12 80
osa-miR1848 MIMAT0007768 Oryza sativa miR1848 12 80
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p 12 80
cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2 12 80
dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p 12 80
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271 12 80
>bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>pxy-miR-8503 MIMAT0033715 Plutella xylostella miR-8503
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus
miR-7950b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus
miR-7950a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus
miR-7950c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>bdi-miR7718-3p MIMAT0030159 Brachypodium distachyon miR7718-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcgcc 6
||||||
Sbjct: 1 atcgcc 6
>mdo-miR-7327-3p MIMAT0028657 Monodelphis domestica miR-7327-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgcc 6
||||||
Sbjct: 6 atcgcc 1
>hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 1 tcgccg 6
>hsa-miR-6785-3p MIMAT0027471 Homo sapiens miR-6785-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcgcc 6
||||||
Sbjct: 3 atcgcc 8
>ame-miR-6012 MIMAT0023670 Apis mellifera miR-6012
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>tca-miR-6012-3p MIMAT0023566 Tribolium castaneum miR-6012-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>dme-miR-4985-3p MIMAT0020222 Drosophila melanogaster
miR-4985-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 1 tcgccg 6
>cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 1 tcgccg 6
>tca-miR-3807-5p MIMAT0018636 Tribolium castaneum miR-3807-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgcc 6
||||||
Sbjct: 8 atcgcc 3
>vvi-miR3627-3p MIMAT0018018 Vitis vinifera miR3627-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 1 tcgccg 6
>esi-miR3467-5p MIMAT0017773 Ectocarpus siliculosus miR3467-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>dsi-miR-986-3p MIMAT0012432 Drosophila simulans miR-986-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>dvi-miR-286-5p MIMAT0032074 Drosophila virilis miR-286-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgcc 6
||||||
Sbjct: 6 atcgcc 1
>osa-miR1848 MIMAT0007768 Oryza sativa miR1848
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 3 tcgccg 8
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 1 tcgccg 6
>cre-miR1150.2 MIMAT0005391 Chlamydomonas reinhardtii miR1150.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 1 tcgccg 6
>dme-miR-986-3p MIMAT0020884 Drosophila melanogaster miR-986-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcgccg 7
||||||
Sbjct: 8 tcgccg 3
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgccg 7
||||||
Sbjct: 1 tcgccg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 45
Number of extensions: 45
Number of successful extensions: 26
Number of sequences better than 100.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
